Job Description P77354 Confidence 4.12% Date Thu Jan 5 12:28:05 GMT 2012 Rank 66 Aligned Residues 51 % Identity 8% Template c2xgvA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:psiv capsid n-terminal domain; PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik) Resolution 2.00 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		F	G	F	P	V	I	L	V	G	G	A	I	L	L	T	G	I	V	.	.	.	C	T	V	V	L	N	E	I	D	A	Q	C	H	L	S	E	K	L	K	Y	A	I	R	D	G	L	K	R	Q	Q	E	L	D	K	W	K	R	E	N
Query Conservation																				.	.	.
Alig confidence																				.	.	.																								.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.
Template Sequence		L	T	S	P	E	T	I	T	Y	W	G	L	I	S	Q	D	L	S	S	R	E	Q	V	Q	L	L	E	V	V	P	G	L	Q	A	D	K	D	M	L	G	A	Y	L	E	.	.	.	.	.	.	E	R	A	R	E	W	D	A	Q	P
Template Known Secondary structure		T	T	S											T	T	T															S														.	.	.	.	.	.								T	S	S
Template Predicted Secondary structure																																														.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.							.	.	.	.	.	80	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions