Job Description P0AB58 Confidence 99.50% Date Thu Jan 5 11:14:41 GMT 2012 Rank 37 Aligned Residues 223 % Identity 13% Template c3qkyA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane assembly lipoprotein yfio; PDBTitle: crystal structure of rhodothermus marinus bamd Resolution 2.15 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.
Query SS confidence																																								.	.	.
Query Sequence		E	A	N	R	L	S	R	D	Y	V	A	G	V	N	F	L	L	S	N	Q	Q	D	K	A	V	D	L	F	L	D	M	L	K	E	D	T	G	T	.	.	.	V	E	A	H	L	T	L	G	N	L	F	R	S	R	G	E	V	D	R	A	I	R	I	H	Q	T	L	M	E	S	A	S	L	T	Y	E	Q	R	L
Query Conservation																																								.	.	.
Alig confidence																																								.	.	.																																	.
Template Conservation																																																																											.
Template Sequence		R	H	S	S	P	Q	E	A	F	E	R	A	M	E	F	Y	N	Q	G	K	Y	D	R	A	I	E	Y	F	K	A	V	F	T	Y	G	R	T	H	E	W	A	A	D	A	Q	F	Y	L	A	R	A	Y	Y	Q	N	K	E	Y	L	L	A	A	S	E	Y	E	R	F	I	Q	I	Y	Q	.	I	D	P	R	V	P
Template Known Secondary structure				S	S														T	T													G	G	G		S		S	T	T															T	T																	T	.	T		T	T
Template Predicted Secondary structure																																																																											.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.									.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.
Query Sequence		L	A	I	Q	Q	L	G	R	D	Y	M	A	A	G	.	.	.	.	.	.	.	.	L	Y	D	R	A	E	D	M	F	N	Q	L	T	D	E	T	D	F	R	I	G	A	L	Q	Q	L	L	Q	I	Y	Q	A	T	S	E	W	Q	K	A	I	D	V	A	E	R	L	V	K	L	G	K	D	K	Q	R	V	E	I
Query Conservation																.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.																																																								.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		Q	A	E	Y	E	R	A	M	C	Y	Y	K	L	S	P	P	Y	E	L	D	Q	T	D	T	R	K	A	I	E	A	F	Q	L	F	I	D	R	Y	P	N	H	E	L	V	D	D	A	T	Q	K	I	R	E	L	R	A	K	L	A	R	K	Q	Y	E	A	A	R	L	Y	E	R	R	E	L	Y	E	A	.	.	.
Template Known Secondary structure																		T	T	S																				T	T		T	T																													T	T					.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	F	Y	C	E	L	A	L	Q	H	M	A	S	D	D	L	D	R	A	M	T	L	L	K	K	G	A	A	A	D	K	N	S	A	R	V	S	I	M	M	G	R	V	F	M	A	K	G	E	Y	A	K	A	V	E	S	L	Q	R	V	I	S	Q	D	R	E	L	V	S	E	T	L	E	M	L	Q	T	C	Y
Query Conservation
Alig confidence		.	.	.	.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	A	A	V	T	Y	E	A	V	F	D	A	Y	P	D	T	P	W	A	D	D	A	L	V	G	A	M	R	A	Y	I	A	Y	A	E	Q	S	V	R	A	R	Q	P	E	R	Y	R	R	A	V	E	L	Y	E	R	L	L	Q	I	F	P	D	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.													T	T	S	T	T																		T	S		G	G	G																				T	T		.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	L	G	K	T	A	E	W	A	E	F	L	Q	R	A	V	E	E
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	P	L	L	R	T	A	E	E	L	Y	T	R	A	R	Q	R
Template Known Secondary structure		.	.	.	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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