Job Description P0AB58 Confidence 95.44% Date Thu Jan 5 11:14:41 GMT 2012 Rank 115 Aligned Residues 250 % Identity 9% Template c3mv2A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	R	D	Y	M	A	A	G	L	Y	D	R	A	E	D	M	F	N	Q	L	T	D	E	T	D	F	R	I	G	A	L	Q	Q	L	L	Q	I	Y	Q	A	T	S	E	W	Q	K	A	I	D	V	A	E	R	L	V	K	L	G	K	D	K	Q	R	V	E	I	A	H	F	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	A	V	L	V	A	A	G	A	F	D	A	A	V	Q	A	L	S	K	Q	V	G	V	V	K	L	E	P	L	K	K	Y	F	T	N	I	Y	E	G	C	R	T	Y	I	P	S	T	P	C	E	L	P	A	Q	L	G	Y	V	R	A	Y	D	D	T	V	S	E	D	Q	I	L	P	Y	V	P	G	L	D	V
Template Known Secondary structure		S							T	T															B				G	G	G											T							S	S	T	T	S								B	S	S		S	S	S		G	G	G			B
Template Predicted Secondary structure
Template SS confidence
		910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.
					183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210					.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.	.	.																													.	.	.	.
Query SS confidence		.	.	.																													.	.	.	.
Query Sequence		.	.	.	Y	C	E	L	A	L	Q	H	M	A	S	D	D	L	D	R	A	M	T	L	L	K	K	G	A	A	A	D	.	.	.	.	K	N	S	A	R	V	S	I	M	M	G	R	V	F	M	A	K	G	E	Y	A	K	A	V	E	S	L	Q	R	V	I	S	Q	D	R	E	L	V	S	E	T	L	E	M	L
Query Conservation		.	.	.																													.	.	.	.
Alig confidence		.	.	.																													.	.	.	.
Template Conservation
Template Sequence		V	N	E	K	M	N	E	G	Y	K	N	F	K	L	N	K	P	D	I	A	I	E	C	F	R	E	A	I	Y	R	I	T	L	L	M	V	D	D	A	E	D	E	K	L	A	H	K	I	L	E	T	A	R	E	Y	I	L	G	L	S	I	E	L	E	R	R	S	L	K	E	G	N	T	V	R	M	L	E	L	A
Template Known Secondary structure															T	T																		T			B		S	S																												T			T	T
Template Predicted Secondary structure
Template SS confidence
		990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	C	Y	Q	Q	L	G	K	T	A	E	W	A	E	F	L	Q	R	A	V	E	E	N	T	G	A	D	A	E	L	M	L	A	D	I	I	E	A	R	D	G	S	E	A	A	Q	V	Y	I	T	R	Q	L	Q	R	H	P	T	M	R	V	F	H	K	L	M	D	Y	H	L	N	E	A	E	E	G	R	A	K
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Y	F	T	K	A	K	L	S	P	I	H	R	T	N	A	L	Q	V	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	H	F	K	H	K	N	F	L	Q	A	S	Y	F	A	G	E	F	L	K	I	I	S	S	G	P	R	A	E	Q	A	R	K	I	K	N	K	A	D	S	M	A	S	D	A
Template Known Secondary structure				G	G	G	S																.	.	.	.	.	.	.	.	.	.	.	.	.						T	T														T	T			S	S															T	S				S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090														.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.
		336	.	.									.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.		370	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.																											.						.
Query SS confidence					.	.	.	.	.	.	.	.																											.						.
Query Sequence		E	S	L	.	.	.	.	.	.	.	.	M	V	L	R	D	M	V	G	E	K	V	R	S	K	P	R	Y	R	C	Q	K	C	G	F	T	A	.	Y	T	L	Y	W	.	H	C	P	S	C	R
Query Conservation					.	.	.	.	.	.	.	.																											.						.
Alig confidence					.	.	.	.	.	.	.	.																											.						.
Template Conservation
Template Sequence		I	P	I	D	F	D	P	Y	A	K	F	D	I	C	A	A	T	Y	K	P	I	Y	E	D	T	P	S	V	S	D	P	L	T	G	S	K	Y	V	I	T	E	K	D	K	I	D	R	I	A	M
Template Known Secondary structure		S			S			T	T	S						T	T	T						S	S	S						T	T	T						G	G	G	T	T	S	B		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		1137	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions