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Job DescriptionP0AB58
Confidence93.84%DateThu Jan 5 11:14:41 GMT 2012
Rank121Aligned Residues249
% Identity14%Templatec3mkrB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   113......120.........130.........140.........150.........160.........170.........
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Query Sequence  LGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKAIDVAERLVKLGKDKQRVEI. . . . . . . . . . . . .
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Template Sequence  LPVDHILAGSFETAMRLLHDQVGVTQFGP. YKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKLN
Template Known Secondary structure 
TT
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B


GG.GTTS

SSTTS



BTTTTT

SSS

B




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   926...930.........940.........950.... .....960.........970.........980.........990.........1000....
 
   180.........190.........200.........210 .........220.........230.........240..... ....250.
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Query Sequence  . AHFYCELALQHMASDDLDRAMTLLKKGAAAD. . . . KNSARVSIMMGRVFMAKGEYAKAVESLQRVISQDR. . . ELVSET
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Template Sequence  DLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRI
Template Known Secondary structure  TT
GGG



STTS


S
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   1005....1010.........1020.........1030.........1040.........1050.........1060.........1070.........1080....
 
   252.......260.........270.........280.........290.........300.........310.........320.........330.
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Query Sequence  LEMLQTCYQQLGKTAEWAEFLQRAVEENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEE
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Template Sequence  CEMAAYFTHSNLQPVHMILVLRTAL. . . . . . . . . . . . . NLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACEKN
Template Known Secondary structure  TTS


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   1085....1090.........1100......... 1110.........1120.........1130.........1140.........1150.
 
   332...... .340.........350.........360.... ..... 370.....
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Query Sequence  GRAKESL. . . . . . . . MVLRDMVGEKVRSKPRYRCQKCGFTA. YTLYW. HCPSCR
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Template Sequence  PTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTT
Template Known Secondary structure 

BSS

S

TTS


BBTTT

B

TTS


TTT


GGGTTSB
TTTS
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   1152.......1160.........1170.........1180.........1190.........1200.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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