Job Description P0AB58 Confidence 97.92% Date Thu Jan 5 11:14:41 GMT 2012 Rank 102 Aligned Residues 232 % Identity 13% Template c3lvhA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:clathrin heavy chain 1; PDBTitle: crystal structure of a clathrin heavy chain and clathrin light chain2 complex Resolution 9.00 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	Q	D	K	A	V	D	L	F	L	D	M	L	K	E	D	T	G	T	V	E	A	H	L	T	L	G	N	L	F	R	S	R	G	E	V	D	R	A	I	R	I	H	Q	T	L	M	E	S	A	S	L	T	Y	E	Q	R	L	L	A	I	Q	Q	L	G	R	D	Y	M	A	A	G	L	Y	D	R	A	E	D
Query Conservation
Alig confidence															.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Sequence		G	N	L	D	R	A	Y	E	F	A	E	R	C	.	.	.	.	.	N	E	P	A	V	W	S	Q	L	A	K	A	Q	L	Q	K	G	M	V	K	E	A	I	D	S	Y	I	K	A	D	D	P	S	S	.	.	.	.	.	.	.	.	.	Y	M	E	V	V	Q	A	A	N	T	S	G	N	W	E	E	L	V	K
Template Known Secondary structure				S	T	T	T	T	T	S	S	S	S		.	.	.	.	.				S		S	S	S					T	T	T	S	S	S		T	T	T	T	T	S	S	S		S	S					.	.	.	.	.	.	.	.	.	S							T	T	T	S				T	T
Template Predicted Secondary structure															.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		1090	.	.	.	.	.	.	.	.	.	1100	.	.						.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.										.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	F	N	Q	L	T	D	E	T	D	F	R	I	G	A	L	Q	Q	L	L	Q	I	Y	Q	A	T	S	E	W	Q	K	A	I	D	V	A	E	R	L	V	K	L	G	K	D	K	Q	R	V	E	I	A	H	F	Y	C	E	L	A	L	Q	H	M	A	S	D	D	L	D	R	A	M	T	L	L	K	K	G	A	A
Query Conservation
Alig confidence		.																																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	Y	L	Q	M	A	R	K	K	A	R	E	S	Y	V	E	T	E	L	I	F	A	L	A	K	T	N	R	L	A	E	L	E	E	F	I	N	G	P	N	N	A	H	.	.	.	.	.	.	.	.	.	.	.	I	Q	Q	V	G	D	R	C	Y	D	E	K	M	Y	D	A	A	K	L	L	Y	N	N	V	S	N
Template Known Secondary structure		.												T	T	T	T									T	T			S	S	T	T	T	S	T	T	T	S		S		S		.	.	.	.	.	.	.	.	.	.	.											S			S	T	T	S	S	T	T	G	G	G	S
Template Predicted Secondary structure		.																																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			1156	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.												.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.
		209						210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.												.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure			.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	.	.	.	.	.	D	K	N	S	A	R	V	S	I	M	M	G	R	V	F	M	A	K	G	E	Y	A	K	A	V	E	S	L	Q	R	V	I	S	Q	D	R	E	L	V	.	.	.	.	.	.	.	.	.	.	.	S	E	T	L	E	M	L	Q	T	C	Y	Q	Q	L	G	K	T	A	E	W	A	E	F	L
Query Conservation			.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	R	L	A	S	T	L	V	H	L	G	E	Y	Q	A	A	V	D	G	A	R	K	A	N	S	T	R	T	W	K	E	V	C	F	A	C	V	D	G	K	E	F	R	L	A	Q	M	C	G	L	H	I	V	V	H	A	D	E	L	E	E	L	I	N	Y	Y	Q	D	R	G	Y	F	E	E	L	I	T	M	L
Template Known Secondary structure		S	T	T	T	S	S	S	S	S	S		S	G	G	G	S	S	T	T	T	G	G	G			S	S		S					T						S		T	T	T	T	T	T										S	S			S	G	G	G	S	S	S	T	T	T	T		G	G	G	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1224	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	A	V	E	E	N	T	G	A	D	A	E	L	M	L	A	D	I	I	E	A	R	D	G	S	E	A	A	Q	V	Y	I	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	A	L	G	L	E	R	A	H	M	G	M	F	T	E	L	A	I	L	Y	S	K	F	K	P	Q	K	M	R	E	H	L	E
Template Known Secondary structure					T	T	S	T	T															S	S		T	T							T
Template Predicted Secondary structure
Template SS confidence
		1304	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions