Job Description P0AB58 Confidence 62.67% Date Thu Jan 5 11:14:41 GMT 2012 Rank 191 Aligned Residues 234 % Identity 12% Template c3eiqC_ PDB info PDB header:hydrolase/antitumor protein Chain: C: PDB Molecule:programmed cell death protein 4; PDBTitle: crystal structure of pdcd4-eif4a Resolution 3.50 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.
Predicted Secondary structure																																																																												.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.
Query Sequence		F	L	L	S	N	Q	Q	D	K	A	V	D	L	F	L	D	M	L	K	E	D	T	G	T	V	E	A	H	L	T	L	G	N	L	F	R	S	R	G	E	V	D	R	A	I	R	I	H	Q	T	L	M	E	S	A	S	L	T	Y	E	Q	R	L	L	A	I	Q	Q	L	G	R	D	Y	M	.	.	.	.	.	A
Query Conservation																																																																												.	.	.	.	.
Alig confidence																																																																												.	.	.	.	.
Template Conservation
Template Sequence		Y	F	E	H	G	D	T	N	E	V	A	E	M	L	R	D	L	N	L	G	E	M	K	S	G	V	P	V	L	A	V	S	L	A	L	E	G	K	A	S	H	R	E	M	T	S	K	L	L	S	D	L	C	G	T	V	M	S	T	N	D	V	E	K	S	F	D	K	L	L	K	D	L	P	E	L	A	L	D	T
Template Known Secondary structure																	T	T	T			G	G	G	G	G										T	T	S														T	T	T	T	T	S																T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		A	G	L	Y	D	R	A	E	D	M	F	N	Q	L	T	D	E	T	D	F	R	I	G	A	L	Q	Q	L	L	Q	I	Y	Q	A	T	S	E	W	Q	K	A	I	D	V	A	E	R	L	V	K	L	G	K	D	K	Q	R	V	E	.	I	A	H	F	Y	C	E	L	A	L	Q	H	M	A	S	D	D	L	D	R
Query Conservation																																																													.
Alig confidence																																																													.
Template Conservation
Template Sequence		P	R	A	P	Q	L	V	G	Q	F	I	A	R	A	V	G	D	G	I	L	C	N	T	Y	I	D	S	Y	K	D	C	V	Q	A	R	A	A	L	D	K	A	T	V	L	L	S	M	V	W	G	S	G	G	G	Q	Q	P	V	N	H	L	V	K	E	I	D	M	L	L	K	E	Y	L	L	S	G	D	I	S	E
Template Known Secondary structure		T	T															T	T		S		S	S	T	T	G	G	G																		T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.					.	.	270	.	.
Predicted Secondary structure																																		.	.																																						.	.	.	.
Query SS confidence																																		.	.																																						.	.	.	.
Query Sequence		A	M	T	L	L	K	K	G	A	A	A	D	K	N	S	A	R	V	S	I	M	M	G	R	V	F	M	A	K	G	E	Y	.	.	A	K	A	V	E	S	L	Q	R	V	I	S	Q	D	R	E	L	V	S	E	T	L	E	M	L	Q	T	C	Y	Q	Q	L	G	K	T	A	E	.	.	.	.	W	A	E	F	L
Query Conservation																																		.	.																																						.	.	.	.
Alig confidence																																		.	.																																						.	.	.	.
Template Conservation
Template Sequence		A	E	H	C	L	K	E	L	E	V	P	H	F	H	H	E	L	V	Y	E	A	I	V	M	V	L	E	S	T	G	E	S	A	F	K	M	I	L	D	L	L	K	S	L	W	K	S	S	T	I	T	I	D	Q	M	K	R	G	Y	E	R	I	Y	N	E	I	P	D	I	N	L	D	V	P	H	S	Y	S	V	L
Template Known Secondary structure												T	T																		S	S																T	T		S																								T	T
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		273	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	A	V	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	F	V	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions