Job Description P0AB58 Confidence 97.94% Date Thu Jan 5 11:14:41 GMT 2012 Rank 101 Aligned Residues 263 % Identity 14% Template c3e4bD_ PDB info PDB header:protein binding Chain: D: PDB Molecule:algk; PDBTitle: crystal structure of algk from pseudomonas fluorescens wcs374r Resolution 2.50 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																					.	.	.	.																																				.
Query SS confidence																					.	.	.	.																																				.
Query Sequence		T	V	E	A	H	L	T	L	G	N	L	F	R	S	R	G	E	V	D	.	.	.	.	R	A	I	R	I	H	Q	T	L	M	E	S	A	S	L	T	Y	E	Q	R	L	L	A	I	Q	Q	L	G	R	D	Y	M	A	A	G	.	L	Y	D	R	A	E	D	M	F	N	Q	L	T	D	E	T	D	F	R	I	G
Query Conservation																					.	.	.	.																																				.
Alig confidence																					.	.	.	.																.	.	.	.	.	.	.														.
Template Conservation																																								.	.	.	.	.	.	.
Template Sequence		Y	P	E	A	G	L	A	Q	V	L	L	Y	R	T	Q	G	T	Y	D	Q	H	L	D	D	V	E	R	I	C	K	A	A	L	N	T	T	D	I	.	.	.	.	.	.	.	C	Y	V	E	L	A	T	V	Y	Q	K	Q	P	E	Q	Q	A	E	L	L	K	Q	M	E	A	G	V	S	R	G	T	V	T	A	Q
Template Known Secondary structure			T	T													S		T	T	T													T	T	T		T	T	.	.	.	.	.	.	.													G	G	G															T		S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.								.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		A	L	Q	Q	L	L	Q	I	Y	Q	A	T	S	E	W	Q	K	A	I	D	V	A	E	R	L	V	K	L	G	K	D	K	Q	R	V	E	I	A	H	F	Y	C	E	L	A	L	Q	H	M	A	S	D	D	L	.	.	.	D	R	A	M	T	L	L	K	K	G	A	A	A	D	K	N	S	A	R	V	S	I	M
Query Conservation																																																								.	.	.
Alig confidence																																					.	.	.	.																.	.	.															.	.
Template Conservation																																					.	.	.	.																																	.	.
Template Sequence		R	V	D	S	V	A	R	V	L	G	D	A	T	L	G	T	P	D	E	K	T	A	Q	A	L	L	E	K	I	A	P	G	Y	P	A	.	.	.	.	S	W	V	S	L	A	Q	L	L	Y	D	F	P	E	L	G	D	V	E	Q	M	M	K	Y	L	D	N	G	R	A	A	D	.	.	Q	P	R	A	E	L	L
Template Known Secondary structure											T		T	T	S	S	S														T	T	T	S	T		.	.	.	.													T	T	S																T	T	.	.
Template Predicted Secondary structure																																					.	.	.	.																																	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.					250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																																												.	.	.	.																																		.
Query SS confidence																																												.	.	.	.																																		.
Query Sequence		M	G	R	V	F	M	A	K	G	E	Y	A	K	A	V	E	S	L	Q	R	V	I	S	Q	D	R	E	L	V	S	E	T	L	E	M	L	Q	T	C	Y	Q	Q	.	.	.	.	L	G	K	T	A	E	W	A	E	F	L	Q	R	A	V	E	E	N	T	G	A	D	A	E	L	M	L	A	D	I	I	E	A	.
Query Conservation																																												.	.	.	.																																		.
Alig confidence																																												.	.	.	.																			.															.
Template Conservation																																																																		.
Template Sequence		L	G	K	L	Y	Y	E	G	K	W	V	P	A	D	A	K	A	A	E	A	H	F	E	K	A	V	G	R	E	V	A	A	D	Y	Y	L	G	Q	I	Y	R	R	G	Y	L	G	K	V	Y	P	Q	K	A	L	D	H	L	L	T	A	A	R	N	G	.	Q	N	S	A	D	F	A	I	A	Q	L	F	S	Q	G
Template Known Secondary structure										S	S	S													T	T	T	T	T															T	T	T	S	S																T	T	.		T	T									T	T	S
Template Predicted Secondary structure																																																																		.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
					295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	R	D	G	S	E	A	A	Q	V	Y	I	T	R	Q	L	Q	R	H	P	T	M	R	V	F	H	K	L	M	D	Y	H	L	N	E	A	E	E	G	R	A	K	E	S	L	M	V	L	R	D	M	V	G	E
Query Conservation		.	.	.
Alig confidence		.	.	.															.	.	.
Template Conservation																			.	.	.
Template Sequence		K	G	T	K	P	D	P	L	N	A	Y	V	F	S	Q	L	A	.	.	.	K	A	T	P	E	A	N	D	L	A	T	Q	L	E	A	P	L	T	P	A	Q	R	A	E	G	Q	R	L	V	Q	Q	E	L	A	A	R
Template Known Secondary structure		T	T	S														T	.	.	.	T														T	T	S
Template Predicted Secondary structure																			.	.	.
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.				.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions