Job Description P0AB58 Confidence 99.81% Date Thu Jan 5 11:14:41 GMT 2012 Rank 17 Aligned Residues 245 % Identity 9% Template c3draA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein PDBTitle: candida albicans protein geranylgeranyltransferase-i2 complexed with ggpp Resolution 1.80 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																														.	.																							.	.	.
Query SS confidence																																														.	.																							.	.	.
Query Sequence		Y	V	A	G	V	N	F	L	L	S	N	Q	Q	D	K	A	V	D	L	F	L	D	M	L	K	E	D	T	G	T	V	E	A	H	L	T	L	G	N	L	F	R	S	R	.	.	G	E	V	D	R	A	I	R	I	H	Q	T	L	M	E	S	A	S	L	T	Y	E	.	.	.	Q	R	L	L	A	I	Q	Q	L
Query Conservation																																														.	.																							.	.	.
Alig confidence																																														.	.																							.	.	.
Template Conservation
Template Sequence		G	L	L	L	A	L	M	K	A	E	E	Y	S	E	R	A	L	H	I	T	E	L	G	I	N	E	L	A	S	H	Y	T	I	W	I	Y	R	F	N	I	L	K	N	L	P	N	R	N	L	Y	D	E	L	D	W	C	E	E	I	A	L	D	N	E	K	N	Y	Q	I	W	N	Y	R	Q	L	I	I	G	Q	I
Template Known Secondary structure										T	T			S															T	T														T		T	T	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	D	Y	M	A	A	G	L	Y	D	R	A	E	D	M	F	N	Q	L	T	D	E	T	D	F	R	I	G	A	L	Q	Q	L	L	Q	I	Y	Q	A	T	S	E	W	Q	K	A	I	D	V	A	E	R	L	V	K	L	G	K	D	K	Q	R	V	E	I	A	H	F	Y	C	E	L	A	L	Q	H	M	A	S
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	E	L	N	N	N	D	F	D	P	Y	R	E	F	D	I	L	E	A	M	L	S	S	D	P	K	N	H	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	W	S	Y	R	K	W	L	V	D	T	F	D	L
Template Known Secondary structure					T	T	T				T															T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.																																						.	.	.	.	150	.	.	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.							.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.				.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.																												.	.	.
Query SS confidence																																			.	.	.	.	.	.																												.	.	.
Query Sequence		D	D	L	D	R	A	M	T	L	L	K	K	G	A	A	A	D	K	N	S	A	R	V	S	I	M	M	G	R	V	F	M	A	.	.	.	.	.	.	K	G	E	Y	A	K	A	V	E	S	L	Q	R	V	I	S	Q	D	R	E	L	V	S	E	T	L	E	.	.	.	M	L	Q	T	C	Y	Q	Q	L	G	K
Query Conservation																																			.	.	.	.	.	.																												.	.	.
Alig confidence																																			.	.	.	.	.	.																												.	.	.
Template Conservation
Template Sequence		H	N	D	A	K	E	L	S	F	V	D	K	V	I	D	T	D	L	K	N	N	S	A	W	S	H	R	F	F	L	L	F	S	K	K	H	L	A	T	D	N	T	I	D	E	E	L	N	Y	V	K	D	K	I	V	K	C	P	Q	N	P	S	T	W	N	Y	L	L	G	I	H	E	R	F	D	R	S	I	T	Q
Template Known Secondary structure		T	T																T	T														S	S	G	G	G																					S	S															T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320
Predicted Secondary structure																				.																														.
Query SS confidence																				.																														.
Query Sequence		T	A	E	W	A	E	F	L	Q	R	A	V	E	E	N	T	G	A	.	D	A	E	L	M	L	A	D	I	I	E	A	R	D	G	S	E	A	A	Q	V	Y	I	T	R	Q	L	Q	R	.	H	P	T	M	R	V	F	H	K
Query Conservation																				.																														.
Alig confidence																				.																														.
Template Conservation
Template Sequence		L	E	E	F	S	L	Q	F	V	D	L	E	K	D	Q	V	T	S	S	F	A	L	E	T	L	A	K	I	Y	T	Q	Q	K	K	Y	N	E	S	R	T	V	Y	D	L	L	K	S	K	Y	N	P	I	R	S	N	F	W	D
Template Known Secondary structure		G						T	T			G	G	G	T			S															T	T															T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions