Phyre 2 alignment of P0AB58 with c1xi4D

Job Description P0AB58
Confidence 99.48% Date Thu Jan 5 11:14:41 GMT 2012

Rank 38 Aligned Residues 291

% Identity 13% Template c1xi4D_

PDB info PDB header:endocytosis/exocytosis Chain: D: PDB Molecule:clathrin heavy chain; PDBTitle: clathrin d6 coat

Resolution 7.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	R	R	S	A	Q	Q	N	K	Q	D	E	A	N	R	L	S	R	D	Y	V	A	G	V	N	F	L	L	S	N	Q	Q	D	K	A	V	D	L	F	L	D	M	L	K	E	D	T	G	T	V	E	A	H	L	T	L	G	N	L	F	R	S	R	G	E	V	D	R	A	I	R	I	H	Q	T	L	M	E	S	A
Query Conservation
Alig confidence																																											.	.	.	.	.
Template Conservation																																											.	.	.	.	.
Template Sequence	G	N	L	D	R	A	Y	E	F	A	E	R	C	N	E	P	A	V	W	S	Q	L	A	K	A	Q	L	Q	K	G	M	V	K	E	A	I	D	S	Y	I	K	A	.	.	.	.	.	D	D	P	S	S	Y	M	E	V	V	Q	A	A	N	T	S	G	N	W	E	E	L	V	K	Y	L	Q	M	A	R	K	K	A
Template Known Secondary structure												T		S		T															S	T	T	T							T	S	.	.	.	.	.							T									T	T													T	T	T
Template Predicted Secondary structure																																											.	.	.	.	.
Template SS confidence
	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.						.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.

	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	L	T	Y	E	Q	R	L	L	A	I	Q	Q	L	G	R	D	Y	M	A	A	G	L	Y	D	R	A	E	D	M	F	N	Q	L	T	D	E	T	D	F	R	I	G	A	L	Q	Q	L	L	Q	I	Y	Q	A	T	S	E	W	Q	K	A	I	D	V	A	E	R	L	V	K	L	G	K	D	K	Q	R	V	E	I
Query Conservation
Alig confidence					.	.	.	.	.																														.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.																														.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	R	E	S	Y	.	.	.	.	.	V	E	T	E	L	I	F	A	L	A	K	T	N	R	L	A	E	L	E	E	F	I	N	G	P	N	N	A	H	.	.	.	.	.	.	I	Q	Q	V	G	D	R	C	Y	D	E	K	M	Y	D	A	A	K	L	L	Y	N	N	V	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	.	.	.	.	.											S	S	S											S				S		.	.	.	.	.	.												T											T	T	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.																														.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1165	.	.	.						.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.							.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.

	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210																										.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	H	F	Y	C	E	L	A	L	Q	H	M	A	S	D	D	L	D	R	A	M	T	L	L	K	K	G	A	A	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	S	A	R	V	S	I	M	M	G	R	V	F	M	A	K	G	E	Y	A	K	A	V
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.
Template Sequence	.	S	N	F	G	R	L	A	S	T	L	V	H	L	G	E	Y	Q	A	A	V	D	G	A	R	K	A	N	S	T	R	T	W	K	E	V	C	F	A	C	V	D	G	K	E	F	R	L	A	Q	M	C	G	L	H	I	V	V	H	A	D	E	L	E	E	L	I	N	Y	Y	Q	D	R	G	Y	F	E	E	L	I
Template Known Secondary structure	.	T												T	T												T	T	S	S		T											T	T								T		S												S	S	S					T	T
Template Predicted Secondary structure	.
Template SS confidence
		1222	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300

	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280							.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																										.	.																						.	.	.	.	.	.
Query SS confidence																										.	.																						.	.	.	.	.	.
Query Sequence	E	S	L	Q	R	V	I	S	Q	D	R	E	L	V	S	E	T	L	E	M	L	Q	T	C	Y	.	.	Q	Q	L	G	K	T	A	E	W	A	E	F	L	Q	R	A	V	E	E	N	T	.	.	.	.	.	.	G	A	D	A	E	L	M	L	A	D	I	I	E	A	R	D	G	S	E	A	A	Q	V	Y	I	T
Query Conservation																										.	.																						.	.	.	.	.	.
Alig confidence															.											.	.																						.	.	.	.	.	.
Template Conservation															.
Template Sequence	T	M	L	E	A	A	L	G	L	E	R	A	H	M	.	G	M	F	T	E	L	A	I	L	Y	S	K	F	K	P	Q	K	M	R	E	H	L	E	L	F	W	S	R	V	N	I	P	K	V	L	R	A	A	E	Q	A	H	L	W	A	E	L	V	F	L	Y	D	K	Y	E	E	Y	D	N	A	I	I	T	M	M
Template Known Secondary structure				T	T	T	T	T	S	S	S				.															G	G	G					T	T	S	S	G	G	G	S		S											T												T	T
Template Predicted Secondary structure															.
Template SS confidence
	1301	.	.	.	.	.	.	.	.	1310	.	.	.	.		.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.

	307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	Q	L	Q	R	H	P	T	M	R	V	F	H	K	L	M	D	Y	H	L	N	E	A	E	E	G	R	A	K	E	S	L	M	V	L	R	D
Query Conservation
Alig confidence									.	.	.
Template Conservation									.	.	.
Template Sequence	N	H	P	T	D	A	W	K	.	.	.	E	G	Q	F	K	D	I	I	T	K	V	A	N	V	E	L	Y	Y	R	A	I	Q	F	Y	L	E
Template Known Secondary structure		S							.	.	.	T	T										S	S	T
Template Predicted Secondary structure									.	.	.
Template SS confidence
	1380	.	.	.	.	.	.	.				.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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