Job Description P0AB58 Confidence 99.72% Date Thu Jan 5 11:14:41 GMT 2012 Rank 27 Aligned Residues 247 % Identity 11% Template c1tnoI_ PDB info PDB header:transferase Chain: I: PDB Molecule:geranylgeranyltransferase type i alpha subunit; PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a kkksktkcvim peptide derived from k-3 ras4b Resolution 2.70 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		D	Y	V	A	G	V	N	F	L	L	S	N	Q	Q	D	K	A	V	D	L	F	L	D	M	L	K	E	D	T	G	T	V	E	A	H	L	T	L	G	N	L	F	R	S	R	G	E	.	V	D	R	A	I	R	I	H	Q	T	L	M	E	S	A	S	L	T	Y	E	Q	R	L	L	A	I	Q	Q	L	G	R	D
Query Conservation																																																	.
Alig confidence								.																																									.																					.	.	.	.
Template Conservation								.																																																														.	.	.	.
Template Sequence		D	Y	F	R	A	V	.	L	Q	R	D	E	R	S	E	R	A	F	K	L	T	R	D	A	I	E	L	N	A	A	N	Y	T	V	W	H	F	R	R	V	L	L	R	S	L	Q	K	D	L	Q	E	E	M	N	Y	I	I	A	I	I	E	E	Q	P	K	N	Y	Q	.	.	.	.	V	W	H	H	R	R	V	L
Template Known Secondary structure								.			T	T																		T	T															T	T																		T	T				.	.	.	.
Template Predicted Secondary structure								.																																																														.	.	.	.
Template SS confidence
		101	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	A	A	G	L	Y	D	R	A	E	D	M	F	N	Q	L	T	D	E	T	D	F	R	I	G	A	L	Q	Q	L	L	Q	I	Y	Q	A	T	S	E	W	Q	K	A	I	D	V	A	E	R	L	V	K	L	G	K	D	K	Q	R	V	E	I	A	H	F	Y	C	E	L	A	L	Q	H	M	A	S	D	D	L
Query Conservation
Alig confidence																																																								.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		V	E	W	L	K	D	P	S	Q	E	L	E	F	I	A	D	I	L	N	Q	D	A	K	N	Y	H	A	W	Q	H	R	Q	W	V	I	Q	E	F	R	L	W	D	N	E	L	Q	Y	V	D	Q	L	L	K	E	.	.	.	.	.	D	V	R	N	N	S	V	W	N	Q	R	H	F	V	I	S	N	T	T	G	Y
Template Known Secondary structure						T			T	T									T	T	T		T	T															T	T			T	T												.	.	.	.	.		T	T														T	T	T		S
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.						230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
								197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.										260
Predicted Secondary structure		.	.	.	.	.	.																						.																																											.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																						.																																											.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	D	R	A	M	T	L	L	K	K	G	A	A	A	D	K	N	S	A	R	V	S	.	I	M	M	G	R	V	F	M	A	K	G	E	Y	A	K	A	V	E	S	L	Q	R	V	I	S	Q	D	R	E	L	V	S	E	T	L	E	M	L	Q	T	C	Y	.	.	.	.	.	.	.	.	.	Q
Query Conservation		.	.	.	.	.	.																						.																																											.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																						.																														.													.	.	.	.	.	.	.	.	.
Template Conservation																																																											.
Template Sequence		S	D	R	A	V	L	E	R	E	V	Q	Y	T	L	E	M	I	K	L	V	P	H	N	E	S	A	W	N	Y	L	K	G	I	L	Q	D	R	G	L	S	R	Y	P	N	L	L	N	Q	L	L	D	L	Q	P	S	H	S	.	S	P	Y	L	I	A	F	L	V	D	I	Y	E	D	M	L	E	N	Q	C	D	N
Template Known Secondary structure			S																			S														T	T	T		G	G	G										T	T	T	T	T	S		.																		T	T		T	T
Template Predicted Secondary structure																																																											.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																.							.
Query SS confidence																.							.
Query Sequence		Q	L	G	K	T	A	E	W	A	E	F	L	Q	R	.	A	V	E	E	N	T	.	G	A	D	A	E	L	M	L	A	D	I	I	E	A	R
Query Conservation																.							.
Alig confidence																.							.
Template Conservation
Template Sequence		K	E	D	I	L	N	K	A	L	E	L	C	E	I	L	A	K	E	K	D	T	I	R	K	E	Y	W	R	Y	I	G	R	S	L	Q	S	K
Template Known Secondary structure																			T	T	S	G	G	G													T	T
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions