 |
Job Description | P62623 | Confidence | 50.40% | Date | Thu Jan 5 12:07:44 GMT 2012 |
Rank | 56 | Aligned Residues | 55 |
% Identity | 20% | Template | c3i09A_ |
PDB info |
PDB header:transport protein | Chain: A: PDB Molecule:periplasmic branched-chain amino acid-binding protein; |
PDBTitle: crystal structure of a periplasmic binding protein (bma2936) from2 burkholderia mallei at 1.80 a resolution
|
Resolution | 1.80 Å |
|
  |   |
188 | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | V | G | P | R | K | D | D | I | C | Y | A | T | T | N | R | Q | E | A | V | R | A | L | A | E | Q | A | E | V | V | L | V | V | G | S | K | N | S | S | N | S | N | R | L | A | E | L | A | Q | R | M | G | K | R | A | F |
Query Conservation |   |
  |   |   |   |   |   |
|
|
|
|   |
|
|   |   |
|
|   |
|
|   |   |
|
|   |   |
|
|   |
|
|
|
|
|
|   |
|
|
|
|
|   |
|
|   |
|
|
|   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |   |
|   |   |   |   |
|   |   |
|   | . |   |   |
|   |   |
|
|   |   |   |   |
|   |   |
|
|
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
Template Sequence |   |
I | E | V | V | Y | A | D | H | Q | N | K | A | D | I | A | A | . |
S | K | A | R | E | W | X | D | R | G | G | L | D | L | L | V | G | G | T | N | S | A | T | A | L | S | X | N | Q | V | A | A | E | K | K | K | V | Y | I |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |
| T | T |
|  |  |  |  |  | . |  |  |  |  |  |  |  |  |  | S |
|  |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
68 | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | |
. | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|