Job Description P08395 Confidence 98.39% Date Thu Jan 5 11:01:27 GMT 2012 Rank 92 Aligned Residues 265 % Identity 18% Template c3n6rF_ PDB info PDB header:ligase Chain: F: PDB Molecule:propionyl-coa carboxylase, beta subunit; PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc) Resolution 3.20 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.								.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.																													.
Query SS confidence																																												.	.	.	.	.	.	.																													.
Query Sequence		L	G	A	S	S	D	R	L	Q	E	N	S	L	F	D	I	V	N	T	I	R	Q	A	K	D	D	R	N	I	T	G	I	V	M	D	L	K	N	F	A	G	G	.	.	.	.	.	.	.	D	Q	P	S	M	Q	Y	I	G	K	A	L	K	E	F	R	D	S	G	K	P	V	Y	A	V	G	E	N	.	Y	S
Query Conservation																																												.	.	.	.	.	.	.																													.
Alig confidence																														.	.									.				.	.	.	.	.	.	.																		.											.
Template Conservation																														.	.									.																												.
Template Sequence		F	T	V	L	G	G	S	V	S	E	T	H	S	K	K	I	C	K	I	M	D	M	A	M	Q	N	G	A	.	.	P	V	I	G	I	N	D	S	.	G	G	A	R	I	Q	E	G	V	D	S	L	A	G	Y	G	E	V	F	Q	R	N	I	M	A	S	G	.	V	V	P	Q	I	S	M	I	M	G	P	C	A
Template Known Secondary structure		T	T	S	G	G	G		B																			T		.	.									.			B		G	G	G	T																		T	T	.	T	S								S
Template Predicted Secondary structure																														.	.									.																												.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		Q	G	Q	Y	Y	L	A	S	F	A	N	K	I	W	L	.	S	P	Q	G	V	V	D	L	H	G	F	A	T	N	G	L	Y	Y	K	S	L	L	D	K	L	K	V	S	T	H	V	F	R	V	G	T	Y	K	S	A	V	E	P	F	I	R	D	D	M	S	P	A	A	R	E	A	D	S	R	W	I	G	E	L
Query Conservation																	.
Alig confidence																	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	A	V	Y	S	P	A	M	T	D	F	I	F	M	V	K	D	S	S	Y	M	F	V	T	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G	G	G						S	S						T	T	T					S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																																					.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	Q	N	Y	L	N	T	V	A	A	N	R	Q	I	P	A	E	Q	V	F	P	G	A	Q	G	L	L	E	G	L	T	K	T	G	G	D	T	A	K	Y	A	L	E	N	K	L	V	D	A	L	A	.	S	S	A	E	I	E	K	A	L	T	K	E	F	G	W	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	D	V	V	K	T	V	T	N	E	Q	V	S	A	E	E	L	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	T	H	T	R	K	S	S	V	A	D	A	A	F	E	N	D	V	E	A	L	A	E	V	R	R	L	V	D	F	L	P	L	N	N	R	E	K	P	P	V	R	P
Template Known Secondary structure		.	.	.																		B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S			S				S	S													T	T	S		S	S	S	S	S				B
Template Predicted Secondary structure		.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.																.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.																																				.	.	330	.	.	.	.						.	.	.	.	.	340	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Query Sequence		S	K	T	D	K	N	Y	R	A	I	S	Y	Y	D	Y	A	L	K	T	P	A	D	T	G	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	V	V	F	A	N	.	.	.	.	.	G	A	I	M	D	G	E
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.				.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		F	F	D	D	P	D	R	I	E	P	S	L	D	T	L	V	P	D	N	P	N	T	P	Y	D	M	K	E	L	I	H	K	L	A	D	E	G	D	F	Y	E	I	Q	E	E	F	A	K	N	I	I	T	G	F	I	R	L	E	G	R	T	V	G	V	V	A	N	Q	P	L	V	L	A	G	C	L	.	.	.	.
Template Known Secondary structure				S		T	T				G	G	G	G	G	T	S		S	S	T	T													S	T	T	S						S	T	T	S	S	T	T									T	T										T	T	T	G	G	G		B	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380								.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.
Query Sequence		E	T	Q	G	N	V	G	G	D	T	T	A	A	Q	I	R	D	A	R	L	D	P	K	V	K	A	I	V	L	R	V	N	S	P	G	G	S	V	T	.	.	.	.	.	.	.	A	S	E	V	I	R	A	E	L	A	A	A	R	A	A	G	K	P	V	V	V	S	M	G	G	M	A	A	S	G	G	Y	W	I
Query Conservation																																									.	.	.	.	.	.	.
Alig confidence		.	.	.																					.	.															.	.	.	.	.	.	.
Template Conservation		.	.	.																					.	.
Template Sequence		.	.	.	D	I	D	S	S	R	K	A	A	R	F	V	R	F	C	D	A	F	E	I	.	.	P	L	L	T	L	I	D	V	P	G	F	L	P	G	T	S	Q	E	Y	G	G	V	I	K	H	G	A	K	L	L	Y	A	Y	G	E	A	T	V	P	M	V	T	V	I	T	R	K	A	Y	G	G	A	Y	V	V
Template Known Secondary structure		.	.	.																		T	T		.	.											B			S							T																	S
Template Predicted Secondary structure		.	.	.																					.	.
Template SS confidence
					367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.			.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		415	.	.					.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure					.	.	.	.
Query SS confidence					.	.	.	.
Query Sequence		S	T	P	.	.	.	.	A	N	Y	I	V	A	N	P	S	T	L	T	G	S	I	G
Query Conservation					.	.	.	.
Alig confidence					.	.	.	.
Template Conservation
Template Sequence		M	S	S	K	H	L	R	A	D	F	N	Y	A	W	P	T	A	E	V	A	V	M	G
Template Known Secondary structure		T	T		G	G	G	T		S						T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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