Job Description P08395 Confidence 99.13% Date Thu Jan 5 11:01:27 GMT 2012 Rank 18 Aligned Residues 217 % Identity 18% Template c2x58B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:peroxisomal bifunctional enzyme; PDBTitle: the crystal structure of mfe1 liganded with coa Resolution 2.80 Å

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		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.					.	.	.	.	.	.	380	.							.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.									.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.									.	.	.	.	.	.
Query Sequence		G	D	S	I	G	V	V	F	A	N	G	A	I	M	D	G	E	E	T	Q	G	N	V	G	G	D	T	T	A	A	Q	I	R	D	A	R	L	D	P	K	V	K	A	I	V	L	R	V	N	.	.	.	.	S	P	G	G	S	V	T	A	.	.	.	.	.	.	S	E	V	I	R	A	E	L	A	A	A	R	A
Query Conservation																																																			.	.	.	.									.	.	.	.	.	.
Alig confidence													.	.	.																																				.	.	.	.									.	.	.	.	.	.
Template Conservation													.	.	.
Template Sequence		P	H	S	L	A	M	I	R	L	C	N	.	.	.	P	P	V	N	A	V	S	P	T	V	I	R	E	V	R	N	G	L	Q	K	A	G	S	D	H	T	V	K	A	I	V	I	C	G	A	N	G	N	F	C	A	G	A	D	I	H	G	F	S	A	F	T	P	G	L	A	L	G	S	L	V	D	E	I	Q	R
Template Known Secondary structure		S	T	T									.	.	.	T	T	T	T		B																	S		T	T									S	T	T		S	B			B		G	G	G	G		T	T	S														T
Template Predicted Secondary structure													.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.				.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430					.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		A	G	K	P	V	V	V	S	M	G	G	M	A	A	S	G	G	Y	W	I	S	T	P	A	N	Y	I	V	A	N	P	S	T	L	T	G	.	.	.	.	S	I	G	I	F	G	V	I	T	T	V	E	N	S	L	D	S	I	G	V	H	T	D	G	V	S	T	S	P	L	A	D	V	S	I	T	R	A	L	P
Query Conservation																																						.	.	.	.
Alig confidence																																						.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	Q	K	P	V	L	A	A	I	Q	G	V	A	L	G	G	G	L	E	L	A	L	G	C	H	Y	R	I	A	N	A	K	A	R	V	G	L	P	E	V	T	L	G	I	L	P	G	A	R	G	T	Q	L	L	P	R	V	V	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S								S				T									S	S						T	T						G	G	G	G	G	T				T	T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.				.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		P	E	A	Q	L	M	M	Q	L	S	I	E	N	G	Y	K	R	F	I	T	L	V	A	D	A	R	H	S	T	P	E	Q	I	D	K	I	A	Q	G	H	V	W	T	G	Q	D	A	K	A	N	G	L	V	D	S	L	.	.	.	G	D	F	D	D	A	V	A	K	A	A	E	L	A	K	V	K	Q	W	H	L
Query Conservation																																																										.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	A	L	D	L	I	T	S	G	K	Y	L	S	A	D	E	A	L	R	L	G	I	L	D	A	V	V	K	S	D	P	V	E	E	A	I	K	F	A	Q	K	I	I	D	K	P	I	E	P	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T	T	T	S		S				S	S														S	S	S		S	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																															145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	Y	V	D	E	P	T	F	F	D	K	V	M	D	N	M	S	G	S	V	R	A	M	L	P	D	A	F	Q	A	M	L	P	A	P	L	A	S	V	A	S	T	V	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	F	N	K	P	V	P	S	L	P	N	M	D	S	V	F	A	E	A	I	A	K	V	R	K	Q	Y	P	G	V	L	A	P	E	T	C	V	R	S	I	Q	A	S	V	K
Template Known Secondary structure			G	G	G	S						T	T																S	T	T
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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