 |
Job Description | P08395 | Confidence | 65.95% | Date | Thu Jan 5 11:01:27 GMT 2012 |
Rank | 168 | Aligned Residues | 64 |
% Identity | 28% | Template | c2issF_ |
PDB info |
PDB header:lyase, transferase | Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; |
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
|
Resolution | 2.90 Å |
|
 |
  |   |
327 | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 390 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
S | I | G | V | V | F | A | N | G | A | I | M | D | G | E | E | T | Q | G | N | V | G | G | D | T | T | A | A | Q | I | R | D | A | R | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | P | K | V | K | A | I | V | L | R | V | N | S | P | G | G | S | V | T | A | S | E | V | . |
. |
. |
. |
. |
. |
I | R | A | E | L | A |
Query Conservation |   |
  |
|
|
|
|   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   | . | . | . | . | . | . | . | . | . | . |
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |   | . | . | . | . | . | . |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|   |   |   |
|   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|
|
|
|
| . | . | . | . |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
K | I | G | V | L | G | V | Q | G | D | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | E | H | V | E | A | L | H | K | L | G | V | E | T | L | I | V | K | L | P | E | Q | L | D | M | V | D | G | L | I | L | . |
. |
. |
. |
P | G | G | E | S | T | T | M | I | R | I | L | K | E | M | D | M | D | E | K | L | V |
Template Known Secondary structure |   |
 |  |  |  |  |
| S | S | S |
|  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
| S | G | G | G | G | G | G |
| S |  |  |  |  | . | . | . | . |
| S | S |
|  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|  |  |  |  | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | |
|
|
|
. | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . |
  |
  |   |
391 | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | A | R | A | A | G | K | P | V | V | V | S | M | G | G | M |
Query Conservation |   |
  |   |   |   |   |   |
|
|
|
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |
|
|
|
|
|
|   |
|   |
Template Sequence |   |
E | R | I | N | N | G | L | P | V | F | A | T | C | A | G | V |
Template Known Secondary structure |   |
 |  |  |  | T | T |
|
|  |  |  |  | T |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
66 | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|