 |
Job Description | P08395 | Confidence | 51.03% | Date | Thu Jan 5 11:01:27 GMT 2012 |
Rank | 180 | Aligned Residues | 91 |
% Identity | 20% | Template | c1xf1A_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:c5a peptidase; |
PDBTitle: structure of c5a peptidase- a key virulence factor from2 streptococcus
|
Resolution | 1.90 Å |
|
 |
  |   |
349 | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | |
. | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | |
|
|
|
. | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . | . | . | . |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
Query Sequence |   |
G | D | T | T | A | A | Q | I | R | D | A | R | L | D | P | K | V | K | A | I | V | L | R | V | N | S | P | G | G | . |
S | V | T | A | S | E | V | I | R | A | E | L | A | A | A | R | A | A | G | K | P | V | V | V | S | M | G | G | M | A | A | S | G | G | Y | W | I | S | T | P | A | N | Y | . |
. |
. |
. |
I | V | A |
Query Conservation |   |
  |   |   |
|   |   |   |
|   |   |
|   |   |
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|   |   |   |   |   |   |
|
|
|
|
|
|   |
|
|   |   |
|
|   | . | . | . | . |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|
|   |   |
|   |   |   | . |
|   |
|
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | R | N | Y | A | Q | A | I | R | D | A | I | N | L | . |
G | A | K | V | I | N | X | S | F | G | N | A | A | L | A | Y | A | N | L | P | D | E | T | K | K | A | F | D | Y | A | K | S | K | G | V | S | I | V | T | S | A | G | N | D | S | S | F | G | G | K | T | R | L | P | L | A | D | H | P | D | Y | G | V | V | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  | T | . | T |
|  |  |  |  |  |
|
| S | S |
|
|
| T | T |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
|
| S |
|
| B | T | T |
| T | T | S |
|
| B | T | T |
|
|
|
| B |
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
239 | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | |
. | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . |
  |
  |   |
424 | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | P | S | T | L | T | G | S | I | G | I | F | G | V | I | T | T |
Query Conservation |   |
  |
|   |
|   |
|
|
|
|
|
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |
Template Sequence |   |
T | P | A | A | A | D | S | T | L | T | V | A | S | Y | S | P | D |
Template Known Secondary structure |   |
S |
| T | T | T |
|
| S |  |  |  |  |  |  | B |
| S |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
318 | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|