Job Description P08395 Confidence 96.87% Date Thu Jan 5 11:01:27 GMT 2012 Rank 111 Aligned Residues 171 % Identity 24% Template c1pixB_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutaconyl-coa decarboxylase a subunit; PDBTitle: crystal structure of the carboxyltransferase subunit of the2 bacterial ion pump glutaconyl-coenzyme a decarboxylase Resolution 2.20 Å

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		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.						.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.
Query Sequence		V	E	P	F	I	R	D	D	M	S	P	A	A	R	E	A	D	S	R	W	I	G	E	L	W	Q	N	Y	L	N	T	V	A	A	N	R	Q	I	P	A	E	Q	V	F	P	G	A	Q	G	L	L	E	G	L	T	K	T	G	G	D	T	A	K	Y	A	L	E	N	K	L	V	D	.	.	.	.	.	A	L	A
Query Conservation																																																																										.	.	.	.	.
Alig confidence						.	.																						.	.																	.	.	.	.	.	.	.	.	.	.	.													.				.	.	.	.	.
Template Conservation						.	.																						.	.																	.	.	.	.	.	.	.	.	.	.	.													.
Template Sequence		G	K	P	L	.	.	K	K	A	D	A	A	N	E	E	Q	L	K	K	I	E	E	E	I	H	Q	L	.	.	I	K	E	A	Q	E	A	G	K	A	D	A	D	V	N	K	.	.	.	.	.	.	.	.	.	.	.	R	G	E	L	T	A	L	Q	R	I	E	K	.	L	V	E	P	G	S	W	R	P	L	N
Template Known Secondary structure						.	.	S	S																				.	.								S	S								.	.	.	.	.	.	.	.	.	.	.	T	T											.		S		T	T						S
Template Predicted Secondary structure						.	.																						.	.																	.	.	.	.	.	.	.	.	.	.	.													.
Template SS confidence
		16	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.												.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.														.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	S	A	E	I	E	K	A	L	T	K	E	F	G	W	S	K	T	D	K	N	Y	R	A	I	S	Y	Y	D	Y	A	L	K	T	P	A	D	T	G	D	S	I	G	V	V	F	A	N	G	A	I	M	D	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	Q	G	N	V	G	G	D	T	T	A
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	N	P	Q	G	N	K	N	G	S	V	A	I	V	K	G	L	G	R	V	.	N	G	K	W	C	V	V	V	A	S	D	N	K	K	L	A	G	A	W	V	P	G	Q	A	E	C	L	L
Template Known Secondary structure		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T			T	T			T	T	S			S									.	T	T										T	T	S	G	G	G		B		T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		80																														.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.											.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	I	R	D	A	R	L	D	P	K	V	K	A	I	V	L	R	V	N	S	P	G	G	S	V	T	A	S	E	V	.	.	.	.	.	.	.	.	.	.	I	R	A	E	L	A	A	A	R	A	A	G	K	P	V	V	V	S	M	G	G	M	A	A	S	G	G	Y	W	I	S	T	P	A	N	Y	I	V	A
Query Conservation																																	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.
Template Sequence		R	A	S	D	T	A	K	T	L	H	V	.	.	P	L	V	Y	V	L	N	C	S	G	V	K	F	D	E	Q	E	K	V	Y	P	N	R	R	G	G	G	T	P	F	F	R	N	A	E	L	N	Q	L	G	I	P	V	I	V	G	I	Y	G	T	N	P	A	G	G	G	Y	H	S	I	S	P	T	V	I	I	A
Template Known Secondary structure											T		.	.											B		G	G	G					S	S	S	T	T	S	T	T												T	T									S				T								S	S	S
Template Predicted Secondary structure													.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		424	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	S	T	L	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	E	K	A	N	M	A
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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