Job Description P08395 Confidence 98.54% Date Thu Jan 5 11:01:27 GMT 2012 Rank 85 Aligned Residues 265 % Identity 20% Template c1on3E_ PDB info PDB header:transferase Chain: E: PDB Molecule:methylmalonyl-coa carboxyltransferase 12s PDBTitle: transcarboxylase 12s crystal structure: hexamer assembly2 and substrate binding to a multienzyme core (with3 methylmalonyl-coenzyme a and methylmalonic acid bound) Resolution 1.90 Å

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		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.								.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.																													.
Query SS confidence																																												.	.	.	.	.	.	.																													.
Query Sequence		L	G	A	S	S	D	R	L	Q	E	N	S	L	F	D	I	V	N	T	I	R	Q	A	K	D	D	R	N	I	T	G	I	V	M	D	L	K	N	F	A	G	G	.	.	.	.	.	.	.	D	Q	P	S	M	Q	Y	I	G	K	A	L	K	E	F	R	D	S	G	K	P	V	Y	A	V	G	E	N	.	Y	S
Query Conservation																																												.	.	.	.	.	.	.																													.
Alig confidence																														.	.									.				.	.	.	.	.	.	.																	.												.
Template Conservation																														.	.									.																											.
Template Sequence		F	T	V	M	G	G	S	A	G	E	T	Q	S	T	K	V	V	E	T	M	E	Q	A	L	L	T	G	T	.	.	P	F	L	F	F	Y	D	S	.	G	G	A	R	I	Q	E	G	I	D	S	L	S	G	Y	G	K	M	F	F	A	N	V	K	L	S	.	G	V	V	P	Q	I	A	I	I	A	G	P	C	A
Template Known Secondary structure		T	T	T	G	G	G		B																			T		.	.									.		S	B		G	G	G																			T	.	T	T	S
Template Predicted Secondary structure																														.	.									.																											.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	Q	Y	Y	L	A	S	F	A	N	K	I	W	L	S	P	Q	G	V	V	D	L	H	G	F	A	T	N	G	L	Y	Y	K	S	L	L	D	K	L	K	V	S	T	H	V	F	R	V	G	T	Y	K	S	A	V	E	P	F	I	R	D	D	M	S	P	A	A	R	E	A	D	S	R	W	I	G	E	L	W
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	A	S	Y	S	P	A	L	T	D	F	I	I	M	T	K	K	A	H	M	F	I	T	G	P	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	G	G	G						S	S						T	T					S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.													.	.
Predicted Secondary structure																																																				.																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	N	Y	L	N	T	V	A	A	N	R	Q	I	P	A	E	Q	V	F	P	G	A	Q	G	L	L	E	G	L	T	K	T	G	G	D	T	A	K	Y	A	L	E	N	K	L	V	D	A	L	A	.	S	S	A	E	I	E	K	A	L	T	K	E	F	G	W	.	.	.	.	.	.	.	.	.	.	.	.	S	K
Query Conservation																																																				.																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	I	K	S	V	T	G	E	D	V	T	A	D	E	L	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	A	H	M	A	I	S	G	N	I	H	F	V	A	E	D	D	D	A	A	E	L	I	A	K	K	L	L	S	F	L	P	Q	N	N	T	E	E	A	S	F	V	N	P
Template Known Secondary structure		.	.	.	.																B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T				S				S	S														T	S		S	S	T	T	S						S
Template Predicted Secondary structure		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.																.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.																																				.	.	330	.	.	.	.						.	.	.	.	.	340	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Query Sequence		T	D	K	N	Y	R	A	I	S	Y	Y	D	Y	A	L	K	T	P	A	D	T	G	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	V	V	F	A	N	.	.	.	.	.	G	A	I	M	D	G	E	E	T
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.				.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		N	N	D	V	S	P	N	T	E	L	R	D	I	V	P	I	D	G	K	K	G	Y	D	V	R	D	V	I	A	K	I	V	D	W	G	D	Y	L	E	V	K	A	G	Y	A	T	N	L	V	T	A	F	A	R	V	N	G	R	S	V	G	I	V	A	N	Q	P	S	V	M	S	G	C	L	.	.	.	.	.	.
Template Known Secondary structure									T	T					S		S	S	T	T					T								S	G	G	G						S	T	T	S	S	T	T									T	T										T	T	T	G	G	G		B	.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.								380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.																																				.	.
Query SS confidence																																						.	.	.	.	.	.	.																																				.	.
Query Sequence		Q	G	N	V	G	G	D	T	T	A	A	Q	I	R	D	A	R	L	D	P	K	V	K	A	I	V	L	R	V	N	S	P	G	G	S	V	.	.	.	.	.	.	.	T	A	S	E	V	I	R	A	E	L	A	A	A	R	A	A	G	K	P	V	V	V	S	M	G	G	M	A	A	S	G	G	Y	W	I	.	.
Query Conservation																																						.	.	.	.	.	.	.																																				.	.
Alig confidence		.																					.	.														.	.	.	.	.	.	.																																				.	.
Template Conservation		.																					.	.
Template Sequence		.	D	I	N	A	S	D	K	A	A	E	F	V	N	F	C	D	S	F	N	I	.	.	P	L	V	Q	L	V	D	V	P	G	F	L	P	G	V	Q	Q	E	Y	G	G	I	I	R	H	G	A	K	M	L	Y	A	Y	S	E	A	T	V	P	K	I	T	V	V	L	R	K	A	Y	G	G	S	Y	L	A	M	C
Template Known Secondary structure		.																		T	T		.	.											B									T	T																	S																	T	T	T
Template Predicted Secondary structure		.																					.	.
Template SS confidence
			344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.			.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
				415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	S	T	P	A	N	Y	I	V	A	N	P	S	T	L	T	G	S	I	G
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		N	R	D	L	G	A	D	A	V	Y	A	W	P	S	A	E	I	A	V	M	G
Template Known Secondary structure			G	G	G	T		S						T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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