 |
Job Description | P0A8A4 | Confidence | 45.54% | Date | Thu Jan 5 11:07:19 GMT 2012 |
Rank | 155 | Aligned Residues | 70 |
% Identity | 10% | Template | c2qroB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:deoxycytidine kinase; |
PDBTitle: human deoxycytidine kinase damp, udp, mg ion product complex
|
Resolution | 3.45 Å |
|
 |
  |   |
201 | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | H | K | L | F | G | L | T | I | D | P | E | R | L | A | A | I | R | E | E | R | R | E | N | S | R | Y | A | S | L | R | Q | C | R | M | E | V | A | E | V | E | A | L | Y | R | K | N | Q | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | W | I | N | S | T | N | Y | S | V | E | E | I | A | T | K | I | L |
Query Conservation |   |
  |   |
|
|
|
|
|
|
|
|
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|   |
|
|   |   |   |   |
|   |   |
|
|   |   |
|   |   |
|   |   |
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|   |
|
|
|
|
|
|
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   | . |   |   |   |   |
|
|
|   |   |   |
|   |
Template Sequence |   |
L | D | G | I | I | Y | L | Q | A | T | P | E | T | C | L | H | R | I | Y | L | R | G | R | N | E | E | Q | G | I | P | L | E | Y | L | E | K | L | H | Y | K | H | E | S | W | L | L | H | R | T | L | K | T | N | F | D | Y | L | Q | E | V | P | I | L | T | L | D | V | . |
N | E | D | F | K | D | K | Y | E | S | L | V |
Template Known Secondary structure |   |
| S |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| G | G | G | G | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|
|
|
|
| S |
| G | G | G | G | G |
|
|  |  |  |  |  | T | . | T | S |
| T | T | T |
|
|  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
172 | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | |
. | 240 | . | . | . | . | . | . | . | . | . | 250 |
  |
  |   |
268 | . | 270 | . |
Predicted Secondary structure |   |
 |  |  |
|
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
D | I | M | G |
Query Conservation |   |
  |   |
|   |
Alig confidence |   |
|
|
|
|
Template Conservation |   |
  |   |
|   |
Template Sequence |   |
E | K | V | K |
Template Known Secondary structure |   |
 |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
Template SS confidence |   |
|
|
|
|
  |   |
251 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|