 |
Job Description | Q46820 | Confidence | 99.17% | Date | Thu Jan 5 12:34:45 GMT 2012 |
Rank | 191 | Aligned Residues | 67 |
% Identity | 25% | Template | c3nksA_ |
PDB info |
PDB header:oxidoreductase/oxidoreductase inhibitor | Chain: A: PDB Molecule:protoporphyrinogen oxidase; |
PDBTitle: structure of human protoporphyrinogen ix oxidase
|
Resolution | 1.90 Å |
|
 |
  |   |
310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | |
|
. | . | . | . | . | . | 340 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|  |  |  |  |  |
|
|
|
|
|
|  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | E | K | V | A | V | I | G | A | G | P | A | G | L | G | C | A | D | I | L | A | R | A | G | . |
. |
V | Q | V | D | V | F | D | R | H | P | E | I | G | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
M | L | T | F | G | I | P | P | F | K | L | D | K | T | V | L | S | Q | R | R | E | I | F | T | A | M | G | I | D |
Query Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|
|   |
| . | . |   |   |
|
|
|   |
|
|   |   |   |   |
|
| . | . | . | . | . | . | . | . | . | . | . |   |
|   |   |
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |
|
|
|
|
|   |
|
|
|   |
|
|   |   |
|   |   |   |
|   |   |   |   |
|   |
|
|
|
|   |   |   |   |
|
|
|   |   |
|   |   |   |   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |
Template Sequence |   |
G | R | T | V | V | V | L | G | G | G | I | S | G | L | A | A | S | Y | H | L | S | R | A | P | C | P | P | K | V | V | L | V | E | S | S | E | R | L | G | G | W | I | R | S | V | R | G | P | N | G | A | I | F | E | L | G | P | R | G | I | R | P | A | G | A | L | G | A | R | T | L | L | L | V | S | E | L | G | L | D |
Template Known Secondary structure |   |
|
|  |  |  |  |  |
|
| B |  |  |  |  |  |  |  |  |  |  |  | T | S | S | S |
|
|  |  |  |  |  |
| S | S | S | S | S | B | T | T |
|
|  |  |  |
| T | T | S |
|  |  |  | S | S |
|
|
| B |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| G |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|