Job Description Q46820 Confidence 100.00% Date Thu Jan 5 12:34:45 GMT 2012 Rank 14 Aligned Residues 339 % Identity 19% Template c3k30B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:histamine dehydrogenase; PDBTitle: histamine dehydrogenase from nocardiodes simplex Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	Y	I	R	L	V	Q	E	G	K	I	I	E	A	A	E	L	C	H	Q	T	S	S	L	P	E	I	C	G	R	V	C	P	Q	D	R	L	C	E	G	A	C	T	L	K	D	H	S	G	A	V	S	I	G	N	L	E	R	Y	I	T	D	T	A	L	A	M	G	W	R	P	D	V	S	K	V	V	P	R
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																											.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																											.	.
Template Sequence		P	F	L	P	N	K	I	R	D	G	R	L	N	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	C	I	G	.	.	.	C	N	I	C	V	S	G	D	L	T	M	S	P	I	R	C	T	Q	N	P	S	M	G	E	E	W	.	.	R	R	G	W	H	P	E	R	I	R	A	K	E	S
Template Known Secondary structure		T	T								T		G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.										T	T	S					S	S		T	T	T	T	T			.	.						S	S						S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																											.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.																.	.	.	.	350				.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.			.	.	.	380	.	.	.	.	.	.	.	.	.	390
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																													.	.																						.
Query SS confidence																																													.	.																						.
Query Sequence		S	E	K	V	A	V	I	G	A	G	P	A	G	L	G	C	A	D	I	L	A	R	A	G	V	Q	V	D	V	F	D	R	H	P	E	I	G	G	M	L	T	F	G	.	.	I	P	P	F	K	L	D	K	T	V	L	S	Q	R	R	E	I	F	T	A	M	.	G	I	D	F	H	L	N	C	E	I	G	R	D
Query Conservation																																													.	.																						.
Alig confidence																																													.	.																						.
Template Conservation
Template Sequence		D	A	R	V	L	V	V	G	A	G	P	S	G	L	E	A	A	R	A	L	G	V	R	G	Y	D	V	V	L	A	E	A	G	R	D	L	G	G	R	V	T	Q	E	S	A	L	P	G	L	S	A	W	G	R	V	K	E	Y	R	E	A	V	L	A	E	L	P	N	V	E	I	Y	R	E	S	P	M	T	G	D
Template Known Secondary structure											S														T								S	S	S	S	S		T							T	S	T	T		G	G	G	G												T		T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.			460	.	.	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		I	T	F	S	D	L	T	S	E	Y	D	A	V	F	I	G	V	G	T	Y	G	M	M	R	A	D	L	P	H	E	D	A	P	G	V	I	Q	A	L	P	F	L	T	A	H	T	R	Q	L	M	G	L	P	E	S	E	E	Y	P	L	T	D	V	E	G	K	R	V	V	V	L	G	G	.	.	G	D	T	T	M
Query Conservation																																																																											.	.
Alig confidence		.	.	.																		.																.	.	.	.	.	.	.	.																														.	.
Template Conservation		.	.	.																		.																.	.	.	.	.	.	.	.
Template Sequence		.	.	.	D	I	V	E	F	G	F	E	H	V	I	T	A	T	G	A	T	.	W	R	T	D	G	V	A	R	F	H	T	T	A	L	P	.	.	.	.	.	.	.	.	I	A	E	G	M	Q	V	L	G	P	D	D	L	F	A	G	R	L	P	D	G	K	K	V	V	V	Y	D	D	D	H	Y	Y	L	G	G
Template Known Secondary structure		.	.	.					T	T												.			S	S			S	S	S		S	S				.	.	.	.	.	.	.	.	B		T	T	S											T				S	S	S								S		S	S
Template Predicted Secondary structure		.	.	.																		.																.	.	.	.	.	.	.	.
Template SS confidence
					471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.		.	.	490	.	.	.	.	.	.	.	.	.	500	.	.									.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.						.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		D	C	L	R	T	S	I	R	L	N	A	A	S	V	T	C	A	Y	R	R	D	E	.	.	.	.	.	V	S	M	P	G	S	R	K	E	V	V	N	A	R	E	E	G	V	E	F	Q	F	N	V	Q	P	Q	Y	I	A	C	D	E	D	G	R	L	T	A	V	G	L	I	R	T	A	M	G	E	P	G	P	D
Query Conservation																								.	.	.	.	.
Alig confidence													.											.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	A	E	L	L	A	Q	K	G	Y	.	E	V	S	I	V	T	P	G	A	Q	V	S	S	W	T	N	N	T	F	E	V	N	R	I	Q	R	R	L	I	E	N	G	V	A	R	V	T	D	H	A	V	V	A	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G
Template Known Secondary structure										T	T		.							S	S	S	S	T	T	G	G	G	G	T	T	T												T	T						S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure													.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.																						.	.
		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	R	R	P	R	P	V	A	G	S	E	F	E	L	P	A	D	V	L	I	M	A	F	G	F	Q	A	H	A	M	P	W	L	Q	G	S	G	I	K	L	D	K	W	G	L	I	Q	T	G	D	V	G	Y	L	P	T	Q	T	H	L	K	K	V	F	A	G	G	D	A	V	H	G	A	D	L	V	V	T	A
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Sequence		G	V	T	V	R	D	T	Y	A	S	I	E	R	E	L	E	C	D	A	V	V	M	V	T	A	R	L	P	R	E	E	L	Y	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	A	R	R	D	A	G	E	I	A	S	V	R	G	I	G	D	A	W	.	A	P	G	T	I	A	A	A
Template Known Secondary structure								T	T	T									S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	T	S		S						G	G	G	T	.	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.																	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.		.	.	.	.	.	.	.	.
		620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	A	G	R	Q	A	A	R	D	M	L	T	L	F	D	T	K	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	W	S	G	R	R	A	A	E	E	F	D	A	V	L	P	S	N	D	E
Template Known Secondary structure												T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions