Phyre 2 alignment of Q46820 with c3ab1B

Job Description Q46820
Confidence 99.96% Date Thu Jan 5 12:34:45 GMT 2012

Rank 64 Aligned Residues 295

% Identity 21% Template c3ab1B_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin--nadp reductase; PDBTitle: crystal structure of ferredoxin nadp+ oxidoreductase

Resolution 2.39 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.											.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	K	V	A	V	I	G	A	G	P	A	G	L	G	C	A	D	I	L	A	R	A	G	V	Q	V	D	V	F	D	R	H	P	E	I	G	G	M	L	T	F	G	I	P	P	F	K	L	.	.	.	.	.	.	.	.	.	.	D	K	T	V	L	S	Q	R	R	E	I	F	T	A	M	G	I	D	F	H	L	N
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	D	L	T	I	I	G	G	G	P	T	G	I	F	A	A	F	Q	C	G	M	N	N	I	S	C	R	I	I	E	S	M	P	Q	L	G	G	Q	L	A	A	L	Y	P	E	K	H	I	Y	D	V	A	G	F	P	E	V	P	A	I	D	L	V	E	S	L	W	A	Q	A	E	R	Y	N	P	D	V	V	L	N
Template Known Secondary structure									S													T	T								S	S	S	S	S									T	T	S					B	T	T	B	S	S															G	G	G							S
Template Predicted Secondary structure
Template SS confidence
	15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.

	381	.	.	.	.	.	.	.	.	390											.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.
Query Sequence	C	E	I	G	R	D	I	T	F	S	.	.	.	.	.	.	.	.	.	.	D	L	T	S	E	Y	D	A	V	F	I	G	V	G	T	Y	G	M	M	R	A	D	L	P	H	E	D	A	P	G	V	I	Q	A	L	P	F	L	T	A	H	T	R	Q	L	M	G	L	P	E	S	E	E	Y	P	L	T	D	V	E
Query Conservation											.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	T	V	T	K	Y	T	K	L	D	D	G	T	F	E	T	R	T	N	T	G	N	V	Y	R	S	R	A	V	L	I	A	A	G	L	G	A	F	E	P	R	K	L	P	Q	L	G	N	I	D	H	L	T	G	S	S	V	Y	Y	A	V	K	.	.	.	.	.	.	.	.	.	.	.	.	S	V	E	D	F	K
Template Known Secondary structure										T	T	S							T	T	S													T	T	S								G	G	G				T	T	T	B	T	T	T			S	S		S	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.													.	.	.	160	.	.

	451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure
Query SS confidence
Query Sequence	G	K	R	V	V	V	L	G	G	G	D	T	T	M	D	C	L	R	T	S	I	R	L	N	A	A	S	V	T	C	A	Y	R	R	D	E	V	S	M	P	G	S	R	K	E	V	V	N	A	R	E	E	G	V	E	F	Q	F	N	V	Q	P	Q	Y	I	A	C	D	E	D	G	R	L	T	A	V	G	L	I	R
Query Conservation
Alig confidence																																																																															.	.
Template Conservation																																																																															.	.
Template Sequence	G	K	R	V	V	I	V	G	G	G	D	S	A	L	D	W	T	V	G	L	I	K	N	A	A	S	V	T	L	V	H	R	G	H	E	F	Q	G	H	G	K	T	A	H	E	V	E	R	A	R	A	N	G	T	I	D	V	Y	L	E	T	E	V	A	S	I	E	E	S	N	G	V	L	T	R	V	H	L	.	.
Template Known Secondary structure	T								S	S										T	T	T	T	S	S							S	S	S	S		S	S		S												T	T	S	S					T										T	T								.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
	163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

	531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
Predicted Secondary structure
Query SS confidence
Query Sequence	T	A	M	G	E	P	G	P	D	G	R	R	R	P	R	P	V	A	G	S	E	F	E	L	P	A	D	V	L	I	M	A	F	G	F	Q	A	H	A	M	P	W	L	Q	G	S	G	I	K	L	D	K	W	G	L	I	Q	T	G	D	V	G	Y	L	P	T	Q	T	H	L	K	K	V	F	A	G	G	D	A	V
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.													.										.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.													.										.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	S	D	G	S	K	W	T	V	E	A	D	R	L	L	I	L	I	G	F	K	S	N	.	L	G	P	L	A	R	W	D	L	E	L	Y	.	E	N	A	L	V	V	D	S	H	.	.	.	.	M	K	T	S	V	D	G	L	Y	A	A	G	D	I	A
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S								S						S						.						T	S	S	S				.	T	T						T	T	.	.	.	.	S	B		S	S	T	T					G	G	G
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.													.										.	.	.	.
Template SS confidence
															241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

	611	.	.	.	.				.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence	H	G	A	D	L	.	.	.	V	V	T	A	M	A	A	G	R	Q	A	A	R	D	M	L	T	L	F	D	T	K	A	S
Query Conservation						.	.	.
Alig confidence						.	.	.
Template Conservation
Template Sequence	Y	Y	P	G	K	L	K	I	I	Q	T	G	L	S	E	A	T	M	A	V	R	H	S	L	S	Y	I	K	P	G	E	K
Template Known Secondary structure			T	T				S																				S	T	T
Template Predicted Secondary structure
Template SS confidence
	301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions