Phyre 2 alignment of Q46820 with c2zbwA

Job Description Q46820
Confidence 99.97% Date Thu Jan 5 12:34:45 GMT 2012

Rank 28 Aligned Residues 304

% Identity 20% Template c2zbwA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin reductase; PDBTitle: crystal structure of thioredoxin reductase-like protein from thermus2 thermophilus hb8

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.											360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.
Query Sequence	P	R	S	E	K	V	A	V	I	G	A	G	P	A	G	L	G	C	A	D	I	L	A	R	A	G	V	Q	V	D	V	F	D	R	H	P	E	I	G	G	M	L	T	F	G	I	P	P	F	K	L	D	.	.	.	.	.	.	.	.	.	.	K	T	V	L	S	Q	R	R	E	I	F	T	A	M	G	I	D	F
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	D	H	T	D	V	L	I	V	G	A	G	P	T	G	L	F	A	G	F	Y	V	G	X	R	G	L	S	F	R	F	V	D	P	L	P	E	P	G	G	Q	L	T	A	L	Y	P	E	K	Y	I	Y	D	V	A	G	F	P	K	V	Y	A	K	D	L	V	K	G	L	V	E	Q	V	A	P	F	N	P	V	Y
Template Known Secondary structure												S													T	T								S	S	S	S	S							T		T	T	S					S	T	T		S	S															G	G	G
Template Predicted Secondary structure
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.

	378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	H	L	N	C	E	I	G	R	D	I	T	F	S	D	L	T	S	E	Y	D	A	V	F	I	G	V	G	T	Y	G	M	M	R	A	D	L	P	H	E	D	A	P	G	V	I	Q	A	L	P	F	L	T	A	H	T	R	Q	L	M	G	L	P	E	S	E	E	Y	P	L	T	D	V	E	G	K	R	V	V	V	L
Query Conservation
Alig confidence																.	.	.	.
Template Conservation																.	.	.	.
Template Sequence	S	L	G	E	R	A	E	T	L	E	R	E	G	D	L	.	.	.	.	F	K	V	T	T	S	Q	G	N	A	Y	T	A	K	A	V	I	I	A	A	G	V	G	A	F	E	P	R	R	I	G	A	P	G	E	R	E	F	E	G	R	G	V	Y	Y	A	V	K	S	K	A	E	F	Q	G	K	R	V	L	I	V
Template Known Secondary structure			S										T	T		.	.	.	.						T	T	S													T	T	S										T	T	T	T	T	T	B	T	T	T			S	S		S		G	G	G	G	T	T
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
	83	.	.	.	.	.	.	90	.	.	.	.	.	.	.					.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

	458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.			.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence	G	G	G	D	T	T	M	D	C	L	R	T	S	I	R	L	N	A	A	S	V	T	C	A	Y	R	R	D	E	V	S	M	P	G	S	R	K	E	V	.	.	V	N	A	R	E	E	G	V	E	F	Q	F	N	V	Q	P	Q	Y	I	A	C	D	E	D	G	R	L	T	A	V	G	L	I	R	T	A	M	G	E
Query Conservation																																								.	.
Alig confidence																			.																					.	.																																.	.	.	.	.	.	.	.
Template Conservation																			.																																																						.	.	.	.	.	.	.	.
Template Sequence	G	G	G	D	S	A	V	D	W	A	L	N	L	L	D	T	A	R	.	R	I	T	L	I	H	R	R	P	Q	F	R	A	H	E	A	S	V	K	E	L	X	K	A	H	E	E	G	R	L	E	V	L	T	P	Y	E	L	R	R	V	E	G	D	E	R	V	R	W	A	V	V	F	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S										T	T	T	T	S	S	.							S	S	S	S			S														T	T	S	S				T	T									S	S	S								.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																																																						.	.	.	.	.	.	.	.
Template SS confidence
	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

	536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence	P	G	P	D	G	R	R	R	P	R	P	V	A	G	S	E	F	E	L	P	A	D	V	L	I	M	A	F	G	F	Q	A	H	A	M	P	W	L	Q	G	S	G	I	K	L	D	K	W	G	L	I	Q	T	G	D	V	G	Y	L	P	T	Q	T	H	L	K	K	V	F	A	G	G	D	A	V	H	G	A	.	.
Query Conservation																																																																															.	.
Alig confidence	.	.	.	.	.	.	.	.	.																										.												.										.	.	.	.																			.	.
Template Conservation	.	.	.	.	.	.	.	.	.																										.												.										.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	H	N	Q	T	Q	E	E	L	A	L	E	V	D	A	V	L	I	L	A	G	Y	I	T	K	L	.	G	P	L	A	N	W	G	L	A	L	E	.	K	N	K	I	K	V	D	T	T	.	.	.	.	X	A	T	S	I	P	G	V	Y	A	C	G	D	I	V	T	Y	P	G	K
Template Known Secondary structure	.	.	.	.	.	.	.	.	.		T	T	T									S													.	G	G	G	G	G	S						.	T	T						T	T	.	.	.	.		B		S	S	T	T					S	T	T				T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.																										.												.										.	.	.	.
Template SS confidence
										230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.					.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

		614	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	D	L	V	V	T	A	M	A	A	G	R	Q	A	A	R	D	M	L	T	L	F	D	T	K	A	S
Query Conservation	.
Alig confidence	.
Template Conservation
Template Sequence	L	P	L	I	V	L	G	F	G	E	A	A	I	A	A	N	H	A	A	A	Y	A	N	P	A	L	K
Template Known Secondary structure																								T	T	S
Template Predicted Secondary structure
Template SS confidence
	295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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