Phyre 2 alignment of Q46820 with c2cfyB

Job Description Q46820
Confidence 99.94% Date Thu Jan 5 12:34:45 GMT 2012

Rank 87 Aligned Residues 306

% Identity 15% Template c2cfyB_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of human thioredoxin reductase 1

Resolution 2.7 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	S	E	K	V	A	V	I	G	A	G	P	A	G	L	G	C	A	D	I	L	A	R	A	G	V	Q	V	D	V	F	D	R	H	P	E	I	G	G	M	L	T	F	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	Y	D	L	I	I	I	G	G	G	S	G	G	L	A	A	A	K	E	A	A	Q	Y	G	K	K	V	M	V	L	D	F	V	T	P	T	P	L	G	T	R	W	G	L	G	G	T	C	V	N	V	G	C	I	P	K	K	L	M	H	Q	A	A	L	L	G	Q	A	L	Q	D	S	R	N	Y	G	W	K	V	E
Template Known Secondary structure	S									S												T	T	T													T	T						T	T							S																							T	T
Template Predicted Secondary structure
Template SS confidence
	12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.

		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	P	P	F	K	L	D	K	T	V	L	S	Q	R	R	E	I	F	T	A	M	G	I	D	F	H	L	N	C	E	I	G	R	D	I	T	F	S	D	L	T	S	E	Y	D	A	V	F	I	G	V	G	T	Y	G	M	M	R	A	D	L	P	H	E	D	A	P	G	V	I	Q	A	L	P	F	L	T	A	H	T
Query Conservation	.
Alig confidence	.
Template Conservation
Template Sequence	E	T	V	K	H	D	W	D	R	M	I	E	A	V	Q	N	H	I	G	S	L	N	W	G	Y	R	V	A	L	R	E	K	K	V	V	Y	E	N	A	Y	G	Q	F	I	G	P	H	R	I	K	A	T	N	N	K	G	K	E	K	I	Y	S	A	E	R	F	L	I	A	T	G	E	R	P	R	Y	L	G	I	P
Template Known Secondary structure	S	S																														T	T													T	T							T	T	S																						S	S	T
Template Predicted Secondary structure
Template SS confidence
	92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.

	433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490			.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence	R	Q	L	M	G	L	P	E	S	E	E	Y	P	L	T	D	V	E	G	K	R	V	V	V	L	G	G	G	D	T	T	M	D	C	L	R	T	S	I	R	L	N	A	A	S	V	T	C	A	Y	R	R	D	E	V	S	M	P	.	.	G	S	R	K	E	V	V	N	A	R	E	E	G	V	E	F	Q	F	N	V
Query Conservation																																																											.	.
Alig confidence																																																											.	.
Template Conservation
Template Sequence	G	D	K	E	Y	C	I	S	S	D	D	L	F	S	L	P	Y	C	P	G	K	T	L	V	V	G	A	S	Y	V	A	L	E	C	A	G	F	L	A	G	I	G	L	D	V	T	V	M	V	R	S	I	L	L	R	G	F	D	Q	D	M	A	N	K	I	G	E	H	M	E	E	H	G	I	K	F	I	R	Q	F
Template Known Secondary structure	T						B						T	T		S	S				S							S													T	T								S	S		S	S	T	T	S															T	T						S
Template Predicted Secondary structure
Template SS confidence
	172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

	511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.		.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence	Q	P	Q	Y	I	A	C	D	E	D	G	R	L	T	A	V	G	L	I	R	T	A	M	G	E	P	G	P	D	G	R	R	R	P	R	P	V	A	G	S	E	F	E	L	P	A	D	V	L	I	M	A	F	G	F	Q	A	H	A	M	P	W	.	L	Q	G	S	G	I	K	L	D	K	W	G	L	I	Q	T	G
Query Conservation																																																															.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	P	I	K	V	E	Q	I	E	A	G	T	P	G	R	L	R	V	V	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	N	S	E	E	I	I	E	G	E	Y	N	T	V	M	L	A	I	G	R	D	A	C	T	R	K	I	G	L	E	T	V	G	V	K	I	N	E	K	T	G	K	I	P	V
Template Known Secondary structure											S	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S	S								S						S					S		S	S	S		G	G	G	T	T					T	T	T			B
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.														.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.		.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence	D	V	G	Y	L	P	T	Q	T	H	L	K	K	V	F	A	G	G	D	A	V	H	G	A	.	D	L	V	V	T	A	M	A	A	G	R	Q	A	A	R	D	M	L
Query Conservation																									.
Alig confidence		.	.	.																					.
Template Conservation		.	.	.
Template Sequence	T	.	.	.	D	E	E	Q	T	N	V	P	Y	I	Y	A	I	G	D	I	L	E	D	K	V	E	L	T	P	V	A	I	Q	A	G	R	L	L	A	Q	R	L	Y
Template Known Secondary structure		.	.	.	T	T	S	B		S	S	T	T					S	T	T	B	T	T	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
	319				320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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