Phyre 2 alignment of Q46820 with c1x31A

Job Description Q46820
Confidence 99.97% Date Thu Jan 5 12:34:45 GMT 2012

Rank 36 Aligned Residues 290

% Identity 20% Template c1x31A_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96

Resolution 2.15 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.				.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.																						.
Query SS confidence																																										.	.	.																						.
Query Sequence	K	V	A	V	I	G	A	G	P	A	G	L	G	C	A	D	I	L	A	R	A	G	V	Q	V	D	V	F	D	R	H	P	E	I	G	G	M	L	T	F	G	.	.	.	I	P	P	F	K	L	D	K	T	V	L	S	Q	R	R	E	I	F	T	A	M	.	G	I	D	F	H	L	N	C	E	I	G	R	D	I
Query Conservation																																										.	.	.																						.
Alig confidence																																										.	.	.																						.
Template Conservation
Template Sequence	D	V	L	V	V	G	A	G	P	A	G	L	A	A	A	R	E	A	S	R	S	G	A	R	V	M	L	L	D	E	R	P	E	A	G	G	T	L	R	E	A	S	G	E	Q	I	D	G	I	D	A	A	Q	W	I	D	A	V	T	E	E	L	A	A	A	E	E	T	T	H	L	Q	R	T	T	V	F	G	S	Y
Template Known Secondary structure								S													T	T								S	S	S	S	S		G	G	G	G	G			S				T	T																		T	T					S	S
Template Predicted Secondary structure
Template SS confidence
	129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

	388	.	390	.	.																									.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	F	S	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	E	Y	D	A	V	F	I	G	V	G	T	Y	G	M	M	R	A	D	L	P	H	E	D	A	P	G	V	I	Q	A	L	P	F	L	T	A	H	T	R	Q	L	M	G	L	P	E	S	E	E
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																													.	.	.	.	.	.	.	.
Template Conservation																																												.																													.	.	.	.	.	.	.	.
Template Sequence	D	A	N	Y	I	L	A	A	Q	R	R	T	V	H	L	D	G	P	S	G	Q	G	V	S	R	E	R	I	W	H	I	R	A	K	Q	V	V	L	A	T	A	A	H	.	E	R	P	I	V	F	E	N	N	D	R	P	G	I	M	L	A	G	S	V	R	S	Y	L	N	R	F	G	.	.	.	.	.	.	.	.
Template Known Secondary structure	T	T	T									S	T	T		S	S				T	T			S																			.							B	T	T	T	S	T	T																.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.																													.	.	.	.	.	.	.	.
Template SS confidence
	209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

	444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	P	L	T	D	V	E	G	K	R	V	V	V	L	G	G	G	D	T	T	M	D	C	L	R	T	S	I	R	L	N	A	A	S	V	T	C	A	Y	R	R	D	E	V	S	M	P	G	S	R	K	E	V	V	N	A	R	E	E	G	V	E	F	Q	F	N	V	Q	P	Q	Y	I	A	C	D	E	D	G	R	L
Query Conservation
Alig confidence	.	.	.	.																													.									.	.	.	.	.
Template Conservation	.	.	.	.																													.									.	.	.	.	.
Template Sequence	.	.	.	.	V	R	A	G	S	K	I	A	V	A	T	T	N	D	S	V	Y	P	L	V	S	E	L	A	A	S	G	G	.	V	V	A	V	I	D	A	R	.	.	.	.	.	Q	N	I	S	A	A	A	A	Q	A	V	T	D	G	V	T	V	L	T	G	S	V	V	A	N	T	E	A	D	A	S	G	E	L
Template Known Secondary structure	.	.	.	.			S		S	S						S	S	G	G	G								G	G	G	T		.		S						S	.	.	.	.	.	S	S											T	T					T	T										T	T	S	S
Template Predicted Secondary structure	.	.	.	.																													.									.	.	.	.	.
Template SS confidence
					280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.						.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

	524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	A	V	G	L	I	R	T	A	M	G	E	P	G	P	D	G	R	R	R	P	R	P	V	A	G	S	E	F	E	L	P	A	D	V	L	I	M	A	F	G	F	Q	A	H	A	M	P	W	L	Q	G	S	G	I	K	L	D	K	W	G	L	I	Q	T	G	D	V	G	Y	L	P	T	Q	T	H	L	K	K	V
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.																						.												.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.																						.												.	.	.	.	.
Template Sequence	S	A	V	L	V	A	T	L	D	E	Q	R	N	.	.	.	.	.	.	.	.	.	.	.	L	G	E	A	Q	R	F	E	A	D	V	L	A	V	S	G	G	F	N	P	V	.	V	H	L	H	S	Q	R	Q	G	K	L	.	.	.	.	.	N	W	D	T	S	I	H	A	F	V	P	A	D	A	V	A	N	Q
Template Known Secondary structure								B		T	T			.	.	.	.	.	.	.	.	.	.	.	B									S												.							T	T				.	.	.	.	.				T	T	T	T						S			T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.																						.												.	.	.	.	.
Template SS confidence
	350	.	.	.	.	.	.	.	.	.	360	.	.												.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.						.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

	604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	A	G	G	D	A	V	H	G	A	D	L	V	V	T	A	M	A	A	G	R	Q	A	A	R	D	M	L	T	L	F	D	T	K	A
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence	H	L	A	G	A	L	.	T	G	L	L	D	T	A	S	A	L	S	T	G	A	A	T	G	A	A	A	A	S	A	A	G	F	E	K
Template Known Secondary structure				G	G	G	.	G	T			S																			T	T
Template Predicted Secondary structure							.
Template SS confidence
	413	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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