Job Description Q46820 Confidence 99.97% Date Thu Jan 5 12:34:45 GMT 2012 Rank 48 Aligned Residues 297 % Identity 18% Template c1v59B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+ Resolution 2.20 Å

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		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	A	V	I	G	A	G	P	A	G	L	G	C	A	D	I	L	A	R	A	G	V	Q	V	D	V	F	D	R	H	P	E	I	G	G	M	L	T	F	G	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	V	I	I	G	G	G	P	A	G	Y	V	A	A	I	K	A	A	Q	L	G	F	N	T	A	C	V	E	K	R	G	K	L	G	G	T	C	L	N	V	G	C	I	P	S	K	A	L	L	N	N	S	H	L	F	H	Q	M	H	T	E	A	Q	K	R	G	I	D	V	N	G	D	I	K	I	N	V	A	N
Template Known Secondary structure									S													T	T								S	S	S	S	S	S							S																				S	S	G	G	G	T				S	S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
						355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	P	F	K	L	D	K	T	V	L	S	Q	R	R	E	I	F	T	A	M	G	I	D	F	H	L	N	C	E	I	G	R	D	I	T	F	S	D	L	T	S	E	Y	D	A	V	F	I	G	V	G	T	Y	G	M	M	R	A	D	L	P	H	E	D	A	P	G	V	I	Q	A	L	P	F	L	T	A
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																																																																	.	.	.	.
Template Conservation																																																																						.	.	.	.
Template Sequence		F	Q	K	A	K	D	D	A	V	K	Q	L	T	G	G	I	E	L	L	F	K	K	N	K	V	T	Y	Y	K	G	N	G	S	F	E	D	E	T	K	I	R	V	T	P	V	D	G	L	E	G	T	V	K	E	D	H	I	L	D	V	K	N	I	I	V	A	T	G	.	.	.	.	S	E	V	T	P	F	P	G
Template Known Secondary structure																								T	T						S					S	S	S	S								S	S		T	T			S	S															.	.	.	.							T	T
Template Predicted Secondary structure																																																																						.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.					.	.	.	.	.	160	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.					.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.
Query SS confidence																																																																									.	.	.	.
Query Sequence		H	T	R	Q	L	M	G	L	P	E	S	E	E	Y	P	L	T	D	V	E	G	K	R	V	V	V	L	G	G	G	D	T	T	M	D	C	L	R	T	S	I	R	L	N	A	A	S	V	T	C	A	Y	R	R	D	E	V	S	M	P	G	S	R	K	E	V	V	N	A	R	E	.	.	.	.	E	G	V	E	F
Query Conservation																																																																									.	.	.	.
Alig confidence																																															.																										.	.	.	.
Template Conservation																																															.
Template Sequence		I	E	I	D	E	E	K	I	V	S	S	T	G	A	L	S	L	K	E	I	P	K	R	L	T	I	I	G	G	G	I	I	G	L	E	M	G	S	V	Y	S	R	L	G	S	.	K	V	T	V	V	E	F	Q	P	Q	I	G	A	S	M	D	G	E	V	A	K	A	T	Q	K	F	L	K	K	Q	G	L	D	F
Template Known Secondary structure					B	T	T	T								T	T		S	S			S								S													T	T		.							S	S	S	S	S	S	S	S	S															T	T
Template Predicted Secondary structure																																															.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.		.	.	.	.	.	.	.	580	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		Q	F	N	V	Q	P	Q	Y	I	A	C	D	E	D	G	R	L	T	A	V	G	L	I	R	T	A	M	G	E	P	G	P	D	G	R	R	R	P	R	P	V	A	G	S	E	F	E	L	P	A	D	V	L	I	M	A	F	G	F	Q	A	H	A	M	P	W	.	L	Q	G	S	G	I	K	L	D	K	W	G	L
Query Conservation																																																																				.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	S	T	K	V	I	S	A	K	R	N	D	D	K	N	V	V	E	I	V	V	E	D	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	K	Q	E	N	L	E	A	E	V	L	L	V	A	V	G	R	R	P	Y	I	A	G	L	G	A	E	K	I	G	L	E	V	D	K	R	G	R
Template Known Secondary structure			T	T										T	T	T	T									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T								S						S							T	T	S						T			B		T	T	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.																.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	T	G	D	V	G	Y	L	P	T	Q	T	H	L	K	K	V	F	A	G	G	D	A	V	H	G	A	D	L	V	V	T	A	M	A	A	G	R	Q	A	A	R	D	M	L	T
Query Conservation
Alig confidence								.	.	.	.
Template Conservation								.	.	.	.
Template Sequence		L	V	I	D	D	Q	.	.	.	.	F	N	S	K	F	P	H	I	K	V	V	G	D	V	T	F	G	P	M	L	A	H	K	A	E	E	E	G	I	A	A	V	E	M	L	K	T
Template Known Secondary structure		B				T	T	.	.	.	.	S	B		S	S	T	T					G	G	G	S	S	S
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
		307	.	.	310	.	.					.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions