Job Description Q46820 Confidence 99.97% Date Thu Jan 5 12:34:45 GMT 2012 Rank 33 Aligned Residues 284 % Identity 20% Template c1ojtA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:surface protein; PDBTitle: structure of dihydrolipoamide dehydrogenase Resolution 2.75 Å

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		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.																										.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query Sequence		V	V	P	R	S	E	K	V	A	V	I	G	A	G	P	A	G	L	G	C	A	D	I	L	A	R	A	G	V	Q	V	D	V	F	D	R	H	P	E	I	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	T	F	G	I	P	P	F	K	L	.	.
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		S	A	D	A	E	Y	D	V	V	V	L	G	G	G	P	G	G	Y	S	A	A	F	A	A	A	D	E	G	L	K	V	A	I	V	E	R	Y	K	T	L	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	L	H	N	A	A	V	I	D	E	V	R	H	L	A	A	N	G	I	K	Y	P	E	P	E	L
Template Known Secondary structure			S												S													T	T								S	S	S		S	S							S																				G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
														359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.																			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	D	K	T	V	L	S	Q	R	R	E	I	F	T	A	M	G	I	D	F	H	L	N	C	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	D	I	T	F	S	D	L	T	S	E	Y	D	A	V	F	I	G	V	G	T	Y	G	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	I	D	M	L	R	A	Y	K	D	G	V	V	S	R	L	T	G	G	L	A	G	M	A	K	S	R	K	V	D	V	I	Q	G	D	G	Q	F	L	D	P	H	H	L	E	V	S	L	T	A	G	D	A	Y	E	Q	A	A	P	T	G	E	K	K	I	V	A	F	K	N	C	I	I	A	A	G	S	R	V	T
Template Known Secondary structure																												T	T													T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	A	D	L	P	H	E	D	A	P	G	V	I	Q	A	L	P	F	L	T	A	H	T	R	Q	L	M	G	L	P	E	S	E	E	Y	P	L	T	D	V	E	G	K	R	V	V	V	L	G	G	G	D	T	T	M	D	C	L	R	T	S	I	R	L	N	A	A	S	V	T	C	A	Y	R	R	D	E	V	S
Query Conservation
Alig confidence								.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation								.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		K	L	P	F	I	P	.	.	E	D	P	R	I	I	D	S	S	G	A	L	A	L	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	G	K	L	L	I	I	G	G	G	I	I	G	L	E	M	G	T	V	Y	S	T	L	G	S	.	R	L	D	V	V	E	M	M	D	G	L	M
Template Known Secondary structure				S	S			.	.			T	T								T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S						S		S														T		.							S	S	S	S	S	S
Template Predicted Secondary structure								.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		278	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.																		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.
		489	490	.	.	.	.	.	.	.	.	.	500	.					.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		M	P	G	S	R	K	E	V	V	N	A	R	E	.	.	.	.	E	G	V	E	F	Q	F	N	V	Q	P	Q	Y	I	A	C	D	E	D	G	R	L	T	A	V	G	L	I	R	T	A	M	G	E	P	G	P	D	G	R	R	R	P	R	P	V	A	G	S	E	F	E	L	P	A	D	V	L	I	M	A	F	G
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	A	D	R	D	L	V	K	V	W	Q	K	Q	N	E	Y	R	F	D	N	I	M	V	N	T	K	T	V	A	V	E	P	K	E	D	G	V	Y	V	T	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	A	N	A	P	K	E	P	Q	R	Y	D	A	V	L	V	A	A	G
Template Known Secondary structure		T	T	S													G	G	G							S										T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S			S	S					S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.																			380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		565	.	.	.	.	570	.	.		.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		F	Q	A	H	A	M	P	W	.	L	Q	G	S	G	I	K	L	D	K	W	G	L	I	Q	T	G	D	V	G	Y	L	P	T	Q	T	H	L	K	K	V	F	A	G	G	D	A	V	H	G	A	D	L	V	V	T	A	M	A	A	G	R	Q	A	A	R	D	M	L
Query Conservation										.
Alig confidence										.																				.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		R	A	P	N	G	K	L	I	S	A	E	K	A	G	V	A	V	T	D	R	G	F	I	E	V	D	K	Q	.	.	.	.	M	R	T	N	V	P	H	I	Y	A	I	G	D	I	V	G	Q	P	M	L	A	H	K	A	V	H	E	G	H	V	A	A	E	N	C	A
Template Known Secondary structure						G	G	G	T	T	G	G	G	T	T					T	T	S						T	T	.	.	.	.	S	B		S	S	T	T					G	G	G	T		S	S																		T
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.					.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions