Phyre 2 alignment of Q46820 with c1ndaD

Job Description Q46820
Confidence 99.95% Date Thu Jan 5 12:34:45 GMT 2012

Rank 80 Aligned Residues 287

% Identity 20% Template c1ndaD_

PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:trypanothione oxidoreductase; PDBTitle: the structure of trypanosoma cruzi trypanothione reductase2 in the oxidized and nadph reduced state

Resolution 3.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																						.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	V	A	V	I	G	A	G	P	A	G	L	G	C	A	D	I	L	A	R	A	.	G	V	Q	V	D	V	F	D	R	H	P	E	I	G	G	M	L	T	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	D	L	V	V	I	G	A	G	S	G	G	L	E	A	A	W	N	A	A	T	L	Y	K	K	R	V	A	V	I	D	V	Q	M	V	H	G	P	P	F	F	S	A	L	G	G	T	C	V	N	V	G	C	V	P	K	K	L	M	V	T	G	A	Q	Y	M	E	H	L	R	E	S	A	G	F	G	W	E	F	D	R
Template Known Secondary structure	S							S														S									S		S	S	S	B	T	T	T	B			T	T						S	S																				G	G	G	G	T					T
Template Predicted Secondary structure
Template SS confidence
	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.

	353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.													.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	I	P	P	F	K	L	D	K	T	V	L	S	Q	R	R	E	I	F	T	A	.	.	.	.	.	.	.	.	.	.	.	.	M	G	I	D	F	H	L	N	C	E	I	G	R	D	I	T	F	S	D	L	T	S	E	Y	D	A	V	F	I	G	V	G	T	Y	G	M	M	R	A	D	L	P	H	E	D	A	P	G
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	T	T	L	R	A	E	W	K	K	L	I	A	V	K	D	E	A	V	L	N	I	N	K	S	Y	E	E	M	F	R	D	T	E	G	L	E	F	F	L	G	W	G	S	L	E	S	K	N	V	V	N	V	R	E	S	A	D	P	A	S	A	V	K	E	R	L	E	T	E	N	I	L	L	A	S	G	S	W	P	H
Template Known Secondary structure	T	T																												T	T		S	S						S						S	S	S						S	S	S	S	T	T	S								B	S
Template Predicted Secondary structure
Template SS confidence
	86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

	421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.			.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence	V	I	Q	A	L	P	F	L	T	A	H	T	R	Q	L	M	G	L	P	E	S	E	E	Y	P	L	T	D	V	E	G	K	R	V	V	V	L	G	G	G	D	T	T	M	D	C	L	R	T	S	I	.	.	R	L	N	A	A	S	V	T	C	A	Y	R	R	D	E	V	S	M	P	G	S	R	K	E	V	V	N
Query Conservation																																																				.	.
Alig confidence																			.	.	.	.	.	.	.	.																										.	.
Template Conservation																			.	.	.	.	.	.	.	.
Template Sequence	M	P	N	I	P	G	I	E	H	C	I	S	S	N	E	A	F	Y	.	.	.	.	.	.	.	.	L	P	E	P	P	R	R	V	L	T	V	G	G	G	F	I	S	V	E	F	A	G	I	F	N	A	Y	K	P	K	D	G	Q	V	T	L	C	Y	R	G	E	M	I	L	R	G	F	D	H	T	L	R	E	E
Template Known Secondary structure					T	T	G	G	G		B						T	T	.	.	.	.	.	.	.	.		S	S			S						S	S	S	T													S		S	S								S	S	S	S	S	S	T	T	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.
Template SS confidence
	166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.									.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

	499	500	.					.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
Predicted Secondary structure				.	.	.	.
Query SS confidence				.	.	.	.
Query Sequence	A	R	E	.	.	.	.	E	G	V	E	F	Q	F	N	V	Q	P	Q	Y	I	A	C	D	E	D	G	R	L	T	A	V	G	L	I	R	T	A	M	G	E	P	G	P	D	G	R	R	R	P	R	P	V	A	G	S	E	F	E	L	P	A	D	V	L	I	M	A	F	G	F	Q	A	H	A	M	P	W	L	Q
Query Conservation				.	.	.	.
Alig confidence				.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	T	K	Q	L	T	A	N	G	I	Q	I	L	T	K	E	N	P	A	K	V	E	L	N	A	D	G	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	T	F	E	S	G	K	K	M	D	F	D	L	V	M	M	A	I	G	R	S	P	R	T	K	D	L	Q	L
Template Known Secondary structure								T	T						T										T	T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	S						S						S					T	T	T	T	S		G
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.																						.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

	575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	S	G	I	K	L	D	K	W	G	L	I	Q	T	G	D	V	G	Y	L	P	T	Q	T	H	L	K	K	V	F	A	G	G	D	A	V	H	G	A	D	L	V	V	T	A	M	A	A	G	R	Q	A	A	R	D	M	L
Query Conservation
Alig confidence																		.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence	Q	N	A	G	V	M	I	K	N	G	G	V	Q	V	D	E	Y	.	.	.	.	S	R	T	N	V	S	N	I	Y	A	I	G	D	V	T	N	R	V	M	L	T	P	V	A	I	N	E	A	A	A	L	V	D	T	V	F
Template Known Secondary structure	G	G	T	T			B	S	S	S	S	B				T	T	.	.	.	.		B		S	S	T	T					T	T	T	T	T	S																			T
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.					.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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