Job Description Q46820 Confidence 99.96% Date Thu Jan 5 12:34:45 GMT 2012 Rank 67 Aligned Residues 288 % Identity 19% Template c1m6iA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:programmed cell death protein 8; PDBTitle: crystal structure of apoptosis inducing factor (aif) Resolution 1.80 Å

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		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.																										.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	S	E	K	V	A	V	I	G	A	G	P	A	G	L	G	C	A	D	I	L	A	R	A	G	V	.	.	Q	V	D	V	F	D	R	H	P	E	I	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	T	F	G	I	P	P	F	K	L	D	K
Query Conservation																													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	S	H	V	P	F	L	L	I	G	G	G	T	A	A	F	A	A	A	R	S	I	R	A	R	D	P	G	A	R	V	L	I	V	S	E	D	P	E	L	P	Y	M	R	P	P	L	S	K	E	L	W	F	S	P	N	V	T	K	T	L	R	F	K	Q	W	N	G	K	E	R	S	I	Y	F	Q	P	P	S	F
Template Known Secondary structure			S								S		S														S	T	T								S	S	S	S			B		S	G	G	G	G	T	G	G	G				T										T	T	S					S	B	S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.								.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.
Query Sequence		T	V	L	S	Q	R	R	E	I	F	T	A	M	G	I	D	F	H	L	N	C	E	I	G	R	.	.	.	.	.	.	.	D	I	T	F	S	D	L	T	S	E	Y	D	A	V	F	I	G	V	G	T	Y	G	M	M	R	A	D	L	P	H	E	D	A	P	G	V	I	Q	A	L	P	F	L	T	A	H	T	R
Query Conservation																											.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.
Template Sequence		Y	V	S	A	Q	D	L	P	H	I	E	N	G	G	V	A	V	L	T	G	K	K	V	V	Q	L	D	V	R	D	N	M	V	K	L	N	D	G	S	Q	I	T	Y	E	K	C	L	I	A	T	G	G	T	P	R	S	L	S	A	I	D	R	A	G	.	.	.	.	.	.	.	.	A	E	V	K	S	R	T	T
Template Known Secondary structure		S	B		T	T	T	T	T	T	S	T	T								T								G	G	G	T					T	T	S																								T	S		.	.	.	.	.	.	.	.						T
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.									.	.	.	.	.	280	.	.
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.				.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.						.	.	.	.
Predicted Secondary structure																																											.	.	.																												.	.	.	.	.
Query SS confidence																																											.	.	.																												.	.	.	.	.
Query Sequence		Q	L	M	G	L	P	E	S	E	E	Y	P	L	T	D	V	E	G	K	R	V	V	V	L	G	G	G	D	T	T	M	D	C	L	R	T	S	I	R	L	N	.	.	.	A	A	S	V	T	C	A	Y	R	R	D	E	V	S	M	P	G	S	R	K	E	V	V	N	A	R	E	.	.	.	.	.	E	G	V	E
Query Conservation																																											.	.	.																												.	.	.	.	.
Alig confidence																																											.	.	.																												.	.	.	.	.
Template Conservation
Template Sequence		L	F	R	K	I	G	D	F	R	S	L	E	K	I	S	R	E	V	K	S	I	T	I	I	G	G	G	F	L	G	S	E	L	A	C	A	L	G	R	K	A	R	A	L	G	T	E	V	I	Q	L	F	P	E	K	G	N	M	G	K	I	L	P	E	Y	L	S	N	W	T	M	E	K	V	R	R	E	G	V	K
Template Known Secondary structure					S															S								S																		T								S	S	S	S	T	T	T	T	T	S														T	T	T
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		F	Q	F	N	V	Q	P	Q	Y	I	A	C	D	E	D	G	R	L	T	A	V	G	L	I	R	T	A	M	G	E	P	G	P	D	G	R	R	R	P	R	P	V	A	G	S	E	F	E	L	P	A	D	V	L	I	M	A	F	G	F	Q	A	H	A	M	P	W	L	Q	G	S	G	I	K	L	D	.	K	W	G
Query Conservation																																																																														.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.												.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Sequence		V	M	P	N	A	I	V	Q	S	V	G	V	S	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	L	I	K	L	K	D	G	R	K	V	E	T	D	H	I	V	A	A	V	G	L	E	P	N	V	.	E	L	A	K	T	G	G	L	E	I	D	S	D	F	G
Template Known Secondary structure					S										T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S						S													.	T	T					T			B		T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.																							.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		585	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.										.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.
Query Sequence		L	I	Q	T	G	D	V	G	Y	L	P	T	Q	T	H	L	K	K	V	F	A	G	G	D	A	V	H	G	A	D	.	.	.	.	.	.	.	.	.	L	V	V	T	A	M	A	A	G	R	Q	A	A	R	D	M	L
Query Conservation																																.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.					.															.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.					.
Template Sequence		G	F	R	V	N	A	E	.	.	.	.	L	Q	A	R	.	S	N	I	W	V	A	G	D	A	A	C	F	Y	D	I	K	L	G	R	R	R	V	E	H	H	D	H	A	V	V	S	G	R	L	A	G	E	N	M	T
Template Known Secondary structure		S					T	T	.	.	.	.					.	T	T					G	G	G						T	T	T																							T
Template Predicted Secondary structure									.	.	.	.					.
Template SS confidence
		420	.	.	.	.	.	.					.	.	.	430		.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions