Job Description Q46820 Confidence 99.95% Date Thu Jan 5 12:34:45 GMT 2012 Rank 76 Aligned Residues 296 % Identity 16% Template c1fcdB_ PDB info PDB header:electron transport(flavocytochrome) Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin- PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution Resolution 2.53 Å

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		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																										.	.																.																																					.	.
Query SS confidence																										.	.																.																																					.	.
Query Sequence		S	E	K	V	A	V	I	G	A	G	P	A	G	L	G	C	A	D	I	L	A	R	A	G	.	.	V	Q	V	D	V	F	D	R	H	P	E	I	G	G	M	.	L	T	F	G	I	P	P	F	K	L	D	K	T	V	L	S	Q	R	R	E	I	F	T	A	M	G	I	D	F	H	L	N	C	E	I	G	.	.
Query Conservation																										.	.																.																																					.	.
Alig confidence																										.	.																.																																					.	.
Template Conservation
Template Sequence		G	R	K	V	V	V	V	G	G	G	T	G	G	A	T	A	A	K	Y	I	K	L	A	D	P	S	I	E	V	T	L	I	E	P	N	T	D	Y	Y	T	C	Y	L	S	N	E	V	I	G	G	D	R	K	L	E	S	I	K	H	G	Y	D	G	L	R	A	H	G	I	Q	V	V	H	D	S	A	T	G	I	D
Template Known Secondary structure											S	T	T										T	T		T	T	S							S		S	S				S	T	T	T						T	S	S		G	G	G	G				S						T	T						S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
						385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	R	D	I	T	F	S	D	L	T	S	E	Y	D	A	V	F	I	G	V	G	T	Y	G	M	M	R	A	D	L	P	H	E	D	A	P	G	V	I	Q	A	L	P	F	L	T	A	H	T	R	Q	L	M	G	L	P	E	S	E	E	Y	P	L	T	D	V	E	G	K	R	V	V	V	L	G	G	G
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																						.																											.	.	.	.
Template Conservation																											.																											.	.	.	.
Template Sequence		P	D	K	K	L	V	K	T	A	G	G	A	E	F	G	Y	D	R	C	V	V	A	P	G	I	.	E	L	I	Y	D	K	I	E	G	Y	S	E	E	A	A	A	K	L	P	H	A	W	K	A	G	E	.	.	.	.	Q	T	A	I	L	R	K	Q	L	E	D	M	A	D	G	G	T	V	V	I	A	P	P	A
Template Known Secondary structure			T	T	T						T	S						S									.					T	T	S	T	T			T	T	G	G	G	T	S					S				.	.	.	.											S	S		T	T
Template Predicted Secondary structure																											.																											.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
												461	.	.	.	.	.	.	.	.	470	.	.	.	.		.	.	.	.	.	480	.	.	.	.	.	.	.		.	.	490	.	.	.	.	.	.	.	.	.	500	.	.						.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.															.														.																.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.															.														.																.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	D	T	T	M	D	C	L	R	T	S	I	R	L	N	.	A	A	S	V	T	C	A	Y	R	R	D	E	V	.	S	M	P	G	S	R	K	E	V	V	N	A	R	E	E	.	.	.	.	.	G	V	E	F	Q	F	N	V	Q	P	Q	Y	I	A	C	D	E	D	G	R	L
Query Conservation		.	.	.	.	.	.	.	.	.	.															.														.																.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.															.														.																.	.	.	.	.
Template Conservation
Template Sequence		A	P	F	R	C	P	P	G	P	Y	E	R	A	S	Q	V	A	Y	Y	L	K	A	H	K	P	M	S	K	V	I	I	L	D	S	S	Q	T	F	S	K	Q	S	Q	F	S	K	G	W	E	R	L	Y	G	F	G	T	E	N	A	M	I	E	W	H	P	G	P	D	S	A	V	V	K	V	D	G	G	E	M	M
Template Known Secondary structure		S	S		B		T	T																		T	T								S		S	S		T	T														T	T	T	T	T		S						T	T	T	T				S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.		.	.	600	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		T	A	V	G	L	I	R	T	A	M	G	E	P	G	P	D	G	R	R	R	P	R	P	V	A	G	S	E	F	E	L	P	A	D	V	L	I	M	A	F	G	F	Q	A	H	A	M	P	W	L	Q	G	S	G	I	K	L	D	K	W	G	L	I	Q	T	G	D	V	G	Y	L	P	T	Q	.	T	H	L	K	K
Query Conservation																																																																												.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.									.														.	.	.			.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.									.														.	.	.
Template Sequence		V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	A	F	G	D	E	F	K	A	D	V	I	N	L	I	P	P	Q	R	A	G	.	.	K	I	A	Q	I	A	G	L	.	T	N	D	A	G	W	C	P	V	D	I	K	T	.	.	.	F	E	S	S	I	H	K	G
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T							S												.	.							T		.		B	T	T	T	B	B		B		S	S	S	.	.	.		B	B	S	S	S	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.									.														.	.	.
Template SS confidence
		237																							.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280				.	.	.	.	.	.	.	.
		603	.	.	.	.	.	.	610	.	.				.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		V	F	A	G	G	D	A	V	H	G	.	.	.	A	D	L	V	V	T	A	M	A	A	G	R	Q	A	A	R	D	M	L	T	L	F	D	T	K	A
Query Conservation												.	.	.
Alig confidence												.	.	.
Template Conservation
Template Sequence		I	H	V	I	G	D	A	S	I	A	N	P	M	P	K	S	G	Y	S	A	N	S	Q	G	K	V	A	A	A	A	V	V	V	L	L	K	G	E	E
Template Known Secondary structure						G	G	G	B			S	S	S		B	S																				T	T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions