Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFB1
Confidence99.93%DateThu Jan 5 11:25:48 GMT 2012
Rank6Aligned Residues245
% Identity13%Templated1dcea1
SCOP infoalpha-alpha superhelix Protein prenylyltransferase Protein prenylyltransferase
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70....... ..80.........90.........100......
Predicted Secondary structure 










..........



Query SS confidence 








































. . . . . . . . . .




























Query Sequence  TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL. . . . . . . . . . RALARNDFSQALAIRPDMPEVFNYLGIYL
Query Conservation        

      
          
      
      
 ..........   
     


 
 
             
Alig confidence 















....




















..........




























Template Conservation       


      
 .... 

    

                         

      
   

       
    
Template Sequence  GELDESVLELTSQILG. . . . ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL
Template Known Secondary structure  T

S....
TT
TTS

TT
Template Predicted Secondary structure 


....













Template SS confidence 















































































   42.......50....... ..60.........70.........80.........90.........100.........110.......
 
   107..110. ........120.........130.........140...... ...150.........160.........170.........
Predicted Secondary structure 

..







.









....
Query SS confidence 




. .


































.
































. . . .
Query Sequence  TQAGN. . FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD. KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE. . . .
Query Conservation       ..   
      
                        .  
      

                      ....
Alig confidence 




..


































.
































....
Template Conservation           

     


  

 
  
                 

      
     
  
                
Template Sequence  SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS
Template Known Secondary structure  T
SS


TT
T


TTTTTT


S



S
Template Predicted Secondary structure 





















Template SS confidence 















































































   118.120.........130.........140.........150.........160.........170.........180.........190.......
 
   180.........190.........200.........210.........220.........230..
Predicted Secondary structure  ...........................











Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . .




















































Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH
Query Conservation  ...........................  
                                    
   
         
Alig confidence  ...........................





























...



















Template Conservation        
      
              

   
   
                   ...      

     
    
 
Template Sequence  GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTV. . . LQSELESCKELQELEPENKW
Template Known Secondary structure  SS

SS

SS
SS





S



...
TT
Template Predicted Secondary structure 











...






Template SS confidence 















































































   198.200.........210.........220.........230.........240.........250.... .....260.........270....
 
   233......240.........250.........260.........270.........280.........290..
Predicted Secondary structure 



Query SS confidence 



























































Query Sequence  LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD
Query Conservation         

  
   
    
      

  
         
   
            
 
Alig confidence 
































....






















Template Conservation         

          

     


 


....    

  
     
        
Template Sequence  CLLTIILLMRALDPLLYEKETLQYFSTLKAVDP. . . . MRAAYLDDLRSKFLLENSVLKME
Template Known Secondary structure 
TGGG
G....GG
Template Predicted Secondary structure 




....
Template SS confidence 



























































   384.....390.........400.........410...... ...420.........430.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions