Job Description P0AFB1 Confidence 99.91% Date Thu Jan 5 11:25:48 GMT 2012 Rank 13 Aligned Residues 246 % Identity 11% Template c3q75A_ PDB info PDB header:transferase Chain: A: PDB Molecule:farnesyltransferase alpha subunit; PDBTitle: cryptococcus neoformans protein farnesyltransferase in complex with2 fpt-ii and tkcvvm peptide Resolution 2.14 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		L	A	V	P	L	Q	P	T	L	Q	Q	E	V	I	L	A	R	M	E	Q	I	L	A	S	R	A	L	T	D	D	E	R	A	Q	L	L	Y	E	R	G	V	L	Y	D	S	L	G	L	.	R	A	L	A	R	N	D	F	S	Q	A	L	A	I	R	P	D	M	P	E	V	F	N	Y	L	G	I	Y	L	T	Q
Query Conservation																																																		.
Alig confidence																									.	.	.	.																						.
Template Conservation																									.	.	.	.
Template Sequence		F	R	A	I	A	A	K	E	E	K	S	E	R	A	L	E	L	T	E	I	I	V	R	.	.	.	.	M	N	P	A	H	Y	T	V	W	Q	Y	R	F	S	L	L	T	S	L	N	K	S	L	E	D	E	L	R	L	M	N	E	F	A	V	Q	N	L	K	S	Y	Q	V	W	H	H	R	L	L	L	L	D	R
Template Known Secondary structure									T			S													.	.	.	.			T	T															T	T																	T	T	T
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		109	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.									.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.																																			.	.	.	.	.	.	.	.
Query SS confidence					.	.																																			.	.	.	.	.	.	.	.
Query Sequence		A	G	N	.	.	F	D	A	A	Y	E	A	F	D	S	V	L	E	L	D	P	T	Y	N	Y	A	H	L	N	R	G	I	A	L	Y	Y	G	G	R	.	.	.	.	.	.	.	.	D	K	L	A	Q	D	D	L	L	A	F	Y	Q	D	D	P	N	D	P	F	R	S	L	W	L	Y	L	A	E	Q	K	L	D
Query Conservation					.	.																																			.	.	.	.	.	.	.	.
Alig confidence					.	.																																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	P	Q	D	P	V	S	E	I	E	Y	I	H	G	S	L	L	P	D	P	K	N	Y	H	T	W	A	Y	L	H	W	L	Y	S	H	F	S	T	L	G	R	I	S	E	A	Q	W	G	S	E	L	D	W	C	N	E	M	L	R	V	D	G	R	N	N	S	A	W	G	W	R	W	Y	L	R	V	S	R	P
Template Known Secondary structure					S													T	S	S		T	T																		T	T																						T	T													T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
										179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.									.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	E	K	Q	A	K	E	V	L	K	Q	H	F	E	K	S	D	K	E	Q	W	G	W	N	I	V	E	F	Y	.	.	.	.	.	.	.	.	L	G	N	I	S	E	Q	T	L	M	E	R	L	K	A	D	A	T	D	N	T	S	L	A	E	H	L	S	E	T	N	F	Y	L	G	K
Query Conservation		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	E	T	S	S	R	S	L	Q	D	E	L	I	Y	I	L	K	S	I	H	L	I	P	H	N	V	S	A	W	N	Y	L	R	G	F	L	K	H	F	S	L	P	L	V	P	I	L	P	A	I	L	P	Y	T	A	F	P	M	P	S	D	L	P	E	D	T	P	L	P	V	P	L	A	L	E	Y	L	A	D
Template Known Secondary structure		T																							T	T															T	T			S	G	G	G	G	G	G	T	G	G	G	G										S	S			S
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		Y	Y	L	S	L	G	D	L	D	S	A	T	A	L	F	K	L	.	A	V	A	N	N	V	H	N	F	V	E	H	R	Y	A	L	L	E	L	S
Query Conservation																			.
Alig confidence																			.
Template Conservation
Template Sequence		S	F	I	E	Q	N	R	V	D	D	A	A	K	V	F	E	K	L	S	S	E	Y	D	Q	M	R	A	G	Y	W	E	F	R	R	R	E	C	A
Template Known Secondary structure						T	T															T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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