Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFB1
Confidence99.70%DateThu Jan 5 11:25:48 GMT 2012
Rank39Aligned Residues210
% Identity16%Templatec3nf1A_
PDB info PDB header:motor protein, transport proteinChain: A: PDB Molecule:kinesin light chain 1; PDBTitle: crystal structure of the tpr domain of kinesin light chain 1
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   51........60.........70.........80.........90.. .......100.........110.........120..
Predicted Secondary structure 







........






Query SS confidence 









































. . . . . . . .





























Query Sequence  LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR. . . . . . . . PDMPEVFNYLGIYLTQAGNFDAAYEAFDSV
Query Conservation 
          
      
      
    
     


 
 ........
                     
      
Alig confidence 









































........





























Template Conservation      
 


    

 


  
   
   

      

 
                               
       
Template Sequence  FQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA
Template Known Secondary structure 
SSS
TTS
TT

SSSTT
Template Predicted Secondary structure 






























Template SS confidence 















































































   202.......210.........220.........230.........240.........250.........260.........270.........280.
 
   123...... 130.........140.........150.........160
Predicted Secondary structure 






........


..................................
Query SS confidence 






. . . . . . . .






























. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  LELDPTY. . . . . . . . NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation         ........                   
      

   ..................................
Alig confidence 






........






























..................................
Template Conservation                                                                                  
Template Sequence  LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY
Template Known Secondary structure 
TT
TTT

TT
TTT
Template Predicted Secondary structure 






































Template SS confidence 















































































   282.......290.........300.........310.........320.........330.........340.........350.........360.
 
   161........170.........180.........190.........200.........210.........220.........230
Predicted Secondary structure  ..........
















Query SS confidence  . . . . . . . . . .





































































Query Sequence  . . . . . . . . . . PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLA
Query Conservation  ..........                     
                                    
   
       
Alig confidence  ..........











































...






















Template Conservation                                        
               ...           
           
Template Sequence  YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE. . . FGKPIWMHAEEREECTSFGEYGS
Template Known Secondary structure  TS
TT
T
...





S




Template Predicted Secondary structure 























...

Template SS confidence 















































































   362.......370.........380.........390.........400.........410..... ....420.........430........
 
   231........240.........250.........260...
Predicted Secondary structure 




Query SS confidence 
































Query Sequence  EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN
Query Conservation           

  
   
    
      

  
Alig confidence 
































Template Conservation 
       


  
   
   

      

 
Template Sequence  PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS
Template Known Secondary structure  T
Template Predicted Secondary structure 




Template SS confidence 
































   461........470.........480.........490...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions