Job Description P0AFB1 Confidence 99.78% Date Thu Jan 5 11:25:48 GMT 2012 Rank 31 Aligned Residues 246 % Identity 13% Template c3mv3B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of a-cop in complex with e-cop Resolution 3.25 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.																				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	Q	Q	E	V	I	L	A	R	M	E	Q	I	L	A	S	R	A	L	T	D	D	E	R	A	Q	L	L	Y	E	R	G	V	L	Y	D	S	L	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	L	A	R	N	D	F	S	Q	A	L	A	I	R	P	D	M	P	E
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		T	G	N	F	V	Q	C	L	Q	E	I	E	K	F	S	K	.	.	.	.	V	T	D	N	T	L	L	F	Y	K	A	K	T	L	L	A	L	G	Q	Y	Q	S	Q	D	P	T	S	K	L	G	K	V	L	D	L	Y	V	Q	F	L	D	T	K	N	I	E	E	L	E	N	L	L	K	D	K	Q	N	S	P	Y
Template Known Secondary structure		T	T											T	S	T	T	.	.	.	.																	S	S							S		S	T	T												T	S	S								T	T	T	T	S
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.					.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.										.	.
Predicted Secondary structure																														.	.																																								.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.																																								.	.	.	.	.	.	.	.	.
Query Sequence		V	F	N	Y	L	G	I	Y	L	T	Q	A	G	N	F	D	A	A	Y	E	A	F	D	S	V	L	E	L	.	.	D	P	T	Y	N	Y	A	H	L	N	R	G	I	A	L	Y	Y	G	G	R	D	K	L	A	Q	D	D	L	L	A	F	Y	Q	D	D	P	N	D	P	.	.	.	.	.	.	.	.	.	F	R
Query Conservation																														.	.																																								.	.	.	.	.	.	.	.	.
Alig confidence																														.	.																																								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	Y	L	L	A	T	A	Q	A	I	L	G	D	L	D	K	S	L	E	T	C	V	E	G	I	D	N	D	E	A	E	G	T	T	E	L	L	L	L	A	I	E	V	A	L	L	N	N	N	V	S	T	A	S	T	I	F	D	N	Y	T	N	A	I	E	D	T	V	S	G	D	N	E	X	I	L	N	L	A
Template Known Secondary structure														T														T	T	T	T	S	S	S															T	T														T	T		T	T	T			S	S	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																																	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.
Query Sequence		S	L	W	L	Y	L	A	E	Q	K	L	D	E	K	Q	A	K	E	V	L	K	Q	H	F	E	K	S	D	K	E	Q	W	G	W	N	I	V	E	F	Y	L	G	N	I	S	E	Q	T	L	M	E	R	L	K	A	D	A	T	D	N	T	S	L	.	.	.	.	.	.	A	E	H	L	S	E	T	N	F	Y	L
Query Conservation																																																																	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.
Template Conservation
Template Sequence		E	S	Y	I	K	F	A	T	N	K	E	T	A	T	S	N	F	Y	Y	Y	E	E	L	S	Q	T	F	P	T	W	K	T	Q	L	G	L	L	N	L	H	L	Q	Q	R	N	I	A	E	A	Q	G	I	V	E	L	L	L	S	D	Y	Y	S	V	E	Q	K	E	N	A	V	L	Y	K	P	T	F	L	A	N	Q
Template Known Secondary structure											T	T	T	T	T													S		S														T	T														S					T	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	Y	Y	L	S	L	G	D	L	D	S	A	T	A	L	F	K	L	A	V	A	N	N	V	H	N	F	V	E	H	R	Y	A	L	L	E	L	S	L	L	G	Q	D	Q	D	D	L	A	E	S	D
Query Conservation
Alig confidence											.	.															.	.	.	.
Template Conservation											.	.															.	.	.	.
Template Sequence		I	T	L	A	L	X	Q	G	L	.	.	D	T	E	D	L	T	N	Q	L	V	K	L	D	H	.	.	.	.	E	H	A	F	I	K	H	H	Q	E	I	D	A	K	F	D	E	L	V	R	K	Y	D
Template Known Secondary structure								T	T		.	.	T	T										T	T		.	.	.	.		S																			T	T
Template Predicted Secondary structure											.	.															.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270					.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions