Job Description P0AFB1 Confidence 44.56% Date Thu Jan 5 11:25:48 GMT 2012 Rank 129 Aligned Residues 166 % Identity 10% Template c3kaeC_ PDB info PDB header:protein binding Chain: C: PDB Molecule:possible protein of nuclear scaffold; PDBTitle: cdc27 n-terminus Resolution 2.30 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	L	L	Y	E	R	G	V	L	Y	D	S	L	G	L	R	A	L	A	R	N	D	F	S	Q	A	L	A	I	R	P	D	M	P	E	V	F	N	Y	L	G	I	Y	L	T	Q	A	G	N	F	D	A	A	Y	E	A	F	D	S	V	L	E	L	D	P	T	Y	N	Y	A	H	L	N	R	G	I	A	L	Y
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	T	S	K	Y	Y	E	S	L	C	Y	K	K	K	K	D	Y	K	K	A	I	K	S	L	E	S	I	L	E	G	K	V	E	R	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	D	A	R	I	Q	E	M	F	V	D	P	G	D	E	E	F	F	E	S	L	L	G	D	L	C	T
Template Known Secondary structure															T	T														T	T		S	B				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S			T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.																	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		Y	G	G	R	D	K	L	A	Q	D	D	L	L	A	F	Y	Q	D	D	P	N	D	P	F	R	S	L	W	L	Y	.	.	.	L	A	E	Q	K	L	D	E	K	Q	A	K	E	V	L	K	Q	H	F	E	K	S	D	K	E	Q	W	G	W	N	I	V	E	F	Y	L	G	N	I	S	E	Q	T	L	M	E	R
Query Conservation																																.	.	.
Alig confidence																																.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	G	Y	R	E	E	G	I	G	H	Y	V	R	S	F	G	K	S	F	L	F	S	P	V	E	N	L	L	L	E	N	K	V	P	Q	K	R	D	R	R	G	I	E	E	E	Y	V	S	D	S	I	E	F	H	E	S	L	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T																												T	T										S																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		L	K	A	D	A	T	D	N	T	S	L	A	E	H	L	S	E	T	N	F	Y	.	L	G	K	Y	Y	L	S	L	G	D	L	D	S	A	T	A	L	F	K	L	A	V	A	N	N	V
Query Conservation																							.
Alig confidence		.	.																				.
Template Conservation		.	.
Template Sequence		.	.	S	L	V	K	K	Y	M	E	H	V	P	G	I	G	S	Y	F	I	S	N	A	A	R	R	Y	F	N	L	G	M	N	D	K	S	K	A	C	F	E	L	V	R	R	K	D	P
Template Known Secondary structure		.	.								T	T	T	T	T																T	T																S	T
Template Predicted Secondary structure		.	.
Template SS confidence
				194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions