Job Description P0AFB1 Confidence 99.90% Date Thu Jan 5 11:25:48 GMT 2012 Rank 19 Aligned Residues 217 % Identity 11% Template c3hymB_ PDB info PDB header:cell cycle, ligase Chain: B: PDB Molecule:cell division cycle protein 16 homolog; PDBTitle: insights into anaphase promoting complex tpr subdomain2 assembly from a cdc26-apc6 structure Resolution 2.80 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	Y	E	R	G	V	L	Y	D	S	L	G	L	R	A	L	A	R	N	D	F	S	Q	A	L	A	I	R	P	D	M	P	E	V	F	N	Y	L	G	I	Y	L	T	Q	A	G	N	F	D	A	A	Y	E	A	F	D	S	V	L	E	L	D	P	T	Y	N	Y	A	H	L	N	R	G	I	A	L	Y	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	V	V	S	L	A	E	R	H	Y	Y	N	C	D	F	K	X	C	Y	K	L	T	S	V	V	X	E	K	D	P	F	H	A	S	C	L	P	V	H	I	G	T	L	V	E	L	N	K	A	N	E	L	F	Y	L	S	H	K	L	V	D	L	Y	P	S	N	P	V	S	W	F	A	V	G	C	Y	Y	L	X
Template Known Secondary structure		T	T											T	T																	T	T		T	T	T												T																	T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		143	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure					.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	R	.	D	K	L	A	Q	D	D	L	L	A	F	Y	Q	D	D	P	N	D	P	F	R	S	L	W	L	Y	L	A	E	Q	K	L	D	E	K	Q	A	K	E	V	L	K	Q	H	F	E	K	S	D	K	E	Q	W	G	W	N	I	V	E	F	Y	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation					.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	H	K	N	E	H	A	R	R	Y	L	S	K	A	T	T	L	E	K	T	Y	G	P	A	W	I	A	Y	G	H	S	F	A	V	E	S	E	H	D	Q	A	X	A	A	Y	F	T	A	A	Q	L	X	K	G	C	H	L	P	X	L	Y	I	G	L	E	Y	G	L	T	N	N	S	K	L	A	E	R	F	F
Template Known Secondary structure		S		S														T	T		T	T		T														T																T	T	T		S													T	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
																																																																209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	S	E	Q	T	L	M	E	R	L	K	A	D	A	T	D	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	Q	A	L	S	I	A	P	E	D	P	F	V	X	H	E	V	G	V	V	A	F	Q	N	G	E	W	K	T	A	E	K	W	F	L	D	A	L	E	K	I	K	A	I	G	N	E	V	T	V	D	K	W	E	P	L	L	N	N	L	G	H	V	C	R	K	L	K	K	Y	A	E	A	L	D	Y	H	R	Q	A
Template Known Secondary structure						T	T		T	T															T	T																	T	T	T	S		S		T	T	T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	L	A	E	H	L	S	E	T	N	F	Y	L	G	K	Y	Y	L	S	L	G	D	L	D	S	A	T	A	L	F	K	L	A	V	A	N	N	V	H	N	F	V	E	H	R	Y	A	L	L	E	L	S	L	L	G	Q
Query Conservation
Alig confidence																																											.	.	.	.
Template Conservation																																											.	.	.	.
Template Sequence		L	V	L	I	P	Q	N	A	S	T	Y	S	A	I	G	Y	I	H	S	L	X	G	N	F	E	N	A	V	D	Y	F	H	T	A	L	G	L	R	R	D	D	.	.	.	.	T	F	S	V	T	X	L	G	H	C	I	E
Template Known Secondary structure					S	T	T		S														T											T	T	T	T	T		S			.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.					.	.	.	.	.	.	.	520	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions