Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFB1
Confidence99.65%DateThu Jan 5 11:25:48 GMT 2012
Rank45Aligned Residues195
% Identity13%Templatec2yhcA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:upf0169 lipoprotein yfio; PDBTitle: structure of bamd from e. coli
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80.........90........ .100.........110.........120.........130........
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Query Sequence  AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV. . . FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI
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Template Sequence  PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM
Template Known Secondary structure  T

TTSTTTT

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   12.......20.........30.........40.........50.........60.........70.........80.........90.
 
   139140.........150.........160.........170.........180.........190.........200.........210........
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Query Sequence  ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER
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Template Sequence  RGLTNMALDDDPQQARAAFS. . . . . . . . . DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVN
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   92.......100.........110. ........120.........130.........140.........150.........160..
 
   219220.........230.........240.........250.........260.....
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Query Sequence  LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV
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Template Sequence  RVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS
Template Known Secondary structure  STTSTT


S
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   177..180.........190.........200.........210.........220...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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