Job Description P0AFB1 Confidence 99.86% Date Thu Jan 5 11:25:48 GMT 2012 Rank 23 Aligned Residues 212 % Identity 14% Template c2vq2A_ PDB info PDB header:structural protein Chain: A: PDB Molecule:putative fimbrial biogenesis and twitching PDBTitle: crystal structure of pilw, widely conserved type iv pilus2 biogenesis factor Resolution 1.54 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	R	A	Q	L	L	Y	E	R	G	V	L	Y	D	S	L	G	L	R	A	L	A	R	N	D	F	S	Q	A	L	A	I	R	P	D	M	P	E	V	F	N	Y	L	G	I	Y	L	T	Q	A	G	N	F	D	A	A	Y	E	A	F	D	S	V	L	E	L	D	P	T	Y	N	Y	A	H	L	N	R	G	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	Q	V	S	N	I	K	T	Q	L	A	M	E	Y	M	R	G	Q	D	Y	R	Q	A	T	A	S	I	E	D	A	L	K	S	D	P	K	N	E	L	A	W	L	V	R	A	E	I	Y	Q	Y	L	K	V	N	D	K	A	Q	E	S	F	R	Q	A	L	S	I	K	P	D	S	A	E	I	N	N	N	Y	G	W
Template Known Secondary structure																		T	T																	T	T															T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		139	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure					.																							.	.	.
Query SS confidence					.																							.	.	.
Query Sequence		A	L	Y	.	Y	G	G	R	D	K	L	A	Q	D	D	L	L	A	F	Y	Q	D	D	P	N	D	.	.	.	P	F	R	S	L	W	L	Y	L	A	E	Q	K	L	D	E	K	Q	A	K	E	V	L	K	Q	H	F	E	K	S	D	K	E	Q	W	G	W	N	I	V	E	F	Y	L	G	N	I	S	E	Q	T
Query Conservation					.																							.	.	.
Alig confidence					.																							.	.	.																																															.	.	.
Template Conservation																																																																													.	.	.
Template Sequence		F	L	C	G	R	L	N	R	P	A	E	S	M	A	Y	F	D	K	A	L	A	D	P	T	Y	P	T	P	Y	I	A	N	L	N	K	G	I	C	S	A	K	Q	G	Q	F	G	L	A	E	A	Y	L	K	R	S	L	A	A	Q	P	Q	F	P	P	A	F	K	E	L	A	R	T	K	M	L	.	.	.	A	G
Template Known Secondary structure					T	T	T															T	S	T	T		S																T	T																S	T	T															.	.	.		T
Template Predicted Secondary structure																																																																													.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		L	M	E	R	L	K	A	D	A	T	D	N	T	S	L	A	E	H	L	S	E	T	N	F	Y	L	G	.	K	Y	Y	L	S	L	G	D	L	D	S	A	T	A	L	F	K	L	A	V	A	N	N	V	H	N	F	V	E	H	R	Y
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		Q	L	G	D	A	D	Y	Y	F	K	K	Y	Q	S	R	V	E	V	L	Q	A	D	D	L	L	L	G	W	K	I	A	K	A	L	G	N	A	Q	A	A	Y	E	Y	E	A	Q	L	Q	A	N	F	P	Y	S	E	E	L	Q	T	V
Template Known Secondary structure																			S																T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions