Job Description P0A7B5 Confidence 100.00% Date Wed Jan 25 15:20:17 GMT 2012 Rank 31 Aligned Residues 231 % Identity 16% Template c3k4yB_ PDB info PDB header:transferase Chain: B: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: crystal structure of isopentenyl phosphate kinase from m. jannaschii2 in complex with ipp Resolution 2.54 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40							.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70							.
Predicted Secondary structure																		.	.																				.	.	.	.	.	.																															.	.	.	.	.	.
Query SS confidence																		.	.																				.	.	.	.	.	.																															.	.	.	.	.	.
Query Sequence		T	L	V	V	K	L	G	T	S	V	L	T	G	G	S	R	.	.	R	L	N	R	A	H	I	V	E	L	V	R	Q	C	A	Q	L	H	A	.	.	.	.	.	.	A	G	H	R	I	V	I	V	T	S	G	A	I	A	A	G	R	E	H	L	G	Y	P	E	L	P	A	T	I	A	.	.	.	.	.	.	S
Query Conservation																		.	.																				.	.	.	.	.	.																															.	.	.	.	.	.
Alig confidence																		.	.																				.	.	.	.	.	.																															.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	I	L	K	L	G	G	S	I	L	S	D	K	N	V	P	Y	S	I	K	W	D	N	L	E	R	I	A	M	E	I	K	N	A	L	D	Y	Y	K	N	Q	N	K	E	I	K	L	I	L	V	H	G	G	G	A	F	G	H	P	V	A	K	K	Y	L	K	I	E	D	G	K	K	I	F	I	N	M	E	K
Template Known Secondary structure									T	T	T	S	S		T	T	S	T	T																								T	T																					T	T				S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		K	Q	L	L	A	A	V	G	Q	S	R	L	I	Q	L	W	E	Q	L	F	S	I	Y	G	I	H	V	G	Q	M	L	L	T	R	A	D	M	E	D	R	E	R	F	L	N	A	R	D	T	L	R	A	L	L	D	N	N	I	V	P	V	I	N	E	N	D	A	V	A	T	A	.	E	I	K	V	G	D	N	D
Query Conservation																																																																									.
Alig confidence																																																.																									.
Template Conservation																																																.
Template Sequence		G	F	W	E	I	Q	R	A	M	R	R	F	N	N	I	I	I	D	T	L	Q	S	Y	D	I	P	A	V	S	I	Q	P	S	S	F	V	V	F	G	D	K	L	I	F	D	T	.	S	A	I	K	E	M	L	K	R	N	L	V	P	V	I	H	G	D	I	V	I	D	D	K	N	G	Y	R	I	I	S	G	D
Template Known Secondary structure																								T	T								G	G	G	T					S	S						.									T	T													T	T	T
Template Predicted Secondary structure																																																.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	S	A	L	A	A	I	L	A	G	A	D	K	L	L	L	L	T	D	Q	K	G	L	Y	T	A	D	P	R	S	N	P	Q	A	E	L	I	K	D	V	Y	G	I	D	D	A	L	R	A	I	A	G	D	S	V	S	G	L	G	T	G	G	M	S	T	K	L	Q	A	A	D	V	A	C	R	A	G	I	D
Query Conservation
Alig confidence																															.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																															.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.											.	.	.
Template Sequence		D	I	V	P	Y	L	A	N	E	L	K	A	D	L	I	L	Y	A	T	D	V	D	G	V	L	I	D	N	K	.	.	.	.	.	.	.	P	I	K	R	I	D	K	N	N	I	Y	K	I	L	N	.	.	.	.	.	.	.	.	.	Y	L	G	M	K	Y	K	I	E	M	.	.	.	I	R	K	N	K	C	R
Template Known Secondary structure												T		S							S	S	S	S	S			T	T		.	.	.	.	.	.	.			S				S	S	T	T						.	.	.	.	.	.	.	.	.											.	.	.	T	T	T	T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.											.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.								190	.	.	.	.	.	.	.	.	.	200	.	.	.	.										.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	I	A	A	G	S	K	P	G	V	I	G	D	V	M	E	G	I	S	V	G	T	L	F	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	V	F	N	G	N	K	A	N	N	I	Y	K	A	L	L	G	E	V	E	G	T	E	I	D
Template Known Secondary structure							S	S	S	T	T							T	T				S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions