Phyre 2 alignment of P0A7B5 with c2cdqB

Job Description P0A7B5
Confidence 99.95% Date Wed Jan 25 15:20:17 GMT 2012

Rank 41 Aligned Residues 237

% Identity 21% Template c2cdqB_

PDB info PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine

Resolution 2.85 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	D	S	Q	T	L	V	V	K	L	G	T	S	V	L	T	G	G	S	R	R	L	N	R	A	H	I	V	E	L	V	R	Q	C	A	Q	L	H	A	A	G	H	R	I	V	I	V	T	S	G	A	I	A	A	G	R	E	H	L	G	Y	P	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.																		.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.																		.	.
Template Sequence	K	G	I	T	C	V	M	K	F	G	G	S	S	V	A	S	A	.	.	.	.	.	.	E	R	M	K	E	V	A	D	L	I	L	T	F	P	E	E	S	.	.	P	V	I	V	L	S	A	M	G	K	T	T	N	N	L	L	L	A	G	E	K	A	V	S	C	G	V	S	N	A	S	E	I	E	E	L	S	I
Template Known Secondary structure											G	G	G	G	S	S		.	.	.	.	.	.														T	T			.	.								S	T	T																	G	G	G	S	T	T
Template Predicted Secondary structure																		.	.	.	.	.	.																		.	.
Template SS confidence
	25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.

																																						66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	T	I	A	S	K	Q	L	L	A	A	V	G	Q	S	R	L	I	Q	L	W	E	Q	L	F	S	I	Y	G	I	H	V	G	Q	M	L	L	T	R	A	D	M
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	I	K	E	L	H	I	R	T	V	K	E	L	N	I	D	P	S	V	I	L	T	Y	L	E	E	L	E	Q	L	L	K	G	I	A	M	M	K	E	L	T	L	R	T	R	D	Y	L	V	S	F	G	E	C	L	S	T	R	I	F	A	A	Y	L	N	T	I	G	V	K	A	R	Q	Y	D	A	F	E	I	G	F
Template Known Secondary structure													T			T																					T																													T	T								T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.

	109	110	.	.	.	.	.	.	.	.												.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.					.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.		.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.		.
Query Sequence	E	D	R	E	R	F	L	N	A	R	.	.	.	.	.	.	.	.	.	.	.	D	T	L	R	A	L	L	D	N	N	I	V	P	V	I	N	E	.	.	.	.	N	.	D	A	V	A	T	A	E	I	K	V	G	D	N	D	N	L	S	A	L	A	A	I	L	A	G	A	D	K	L	L	L	L	T	D	Q	K
Query Conservation											.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.		.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.		.
Template Conservation
Template Sequence	I	T	T	D	D	F	T	N	G	D	I	L	E	A	T	Y	P	A	V	A	K	R	L	Y	D	D	W	M	H	D	P	A	V	P	I	V	T	G	F	L	G	K	G	W	K	T	G	A	V	T	T	L	G	R	G	G	S	D	L	T	A	T	T	I	G	K	A	L	G	L	K	E	I	Q	V	W	K	D	V	D
Template Known Secondary structure		B		S		S	T	T			B		T	T																S								S	S					T	T	T								S	S													T	T		S							S	S	S
Template Predicted Secondary structure
Template SS confidence
	177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

	173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	L	Y	T	A	D	P	R	S	N	P	Q	A	E	L	I	K	D	V	Y	G	I	D	D	A	L	R	A	I	A	G	D	S	V	S	G	L	G	T	G	G	M	S	T	K	L	Q	A	A	D	V	A	C	R	A	G	I	D	T	I	I	A	A	G	S	K	P	G	V	I	G	D	V	M	E	G	I	S	V	G
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Sequence	G	V	L	T	C	D	P	T	I	Y	K	R	A	T	P	V	P	Y	L	T	F	D	E	A	A	E	L	A	Y	F	G	A	Q	V	L	H	P	.	.	.	.	.	.	.	.	.	Q	S	M	R	P	A	R	E	G	E	I	P	V	R	V	K	N	S	Y	N	P	.	.	.	.	.	.	.	.	.	K	A	P	G
Template Known Secondary structure	S	S	B	S	S		T	T	T		T	T			B											T	T	T	T	T	S	S	S				G	.	.	.	.	.	.	.	.	.	G	G	G						T	T								T	T	S	T	.	.	.	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template SS confidence
	257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.										.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.										.	.	.	.

	253	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	L	F	H	A	Q	A	T	P	L	E	N	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	T	I	I	T	K	T	R	D	M	T	K	S	I
Template Known Secondary structure					S					T	T		S
Template Predicted Secondary structure
Template SS confidence
	319	320	.	.	.	.	.	.	.	.	.	330	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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