Job Description P08839 Confidence 100.00% Date Thu Jan 5 11:01:38 GMT 2012 Rank 9 Aligned Residues 286 % Identity 29% Template d1vbga1 SCOP info TIM beta/alpha-barrel Phosphoenolpyruvate/pyruvate domain Pyruvate phosphate dikinase, C-terminal domain Resolution 2.30

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		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.											.	.	.	310	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.
Query Sequence		E	L	A	K	L	K	D	L	P	A	I	T	L	D	G	H	Q	V	E	V	C	A	N	I	G	T	V	R	D	V	E	G	A	E	R	N	G	A	E	G	V	G	L	Y	R	T	E	F	L	F	M	D	R	D	A	.	.	.	.	.	.	.	.	.	.	L	P	T	E	E	E	.	.	.	.	.	.	.	.	.
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																																								.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.
Template Sequence		D	L	G	T	F	M	A	W	V	D	D	V	R	.	.	.	K	L	K	V	L	A	N	A	D	T	P	D	D	A	L	T	A	R	N	N	G	A	Q	G	I	G	L	C	R	T	E	H	M	F	F	A	S	D	E	R	I	K	A	V	R	Q	M	I	M	A	P	T	L	E	L	R	Q	Q	A	L	D	R	L	L
Template Known Secondary structure															.	.	.		S							S	S										T	T			S											T	T															S	S
Template Predicted Secondary structure															.	.	.
Template SS confidence
		523	.	.	.	.	.	.	530	.	.	.	.	.				.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
				313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.																									.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure		.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	Q	F	A	A	Y	K	A	V	A	E	A	C	G	S	Q	A	V	I	V	R	T	M	D	I	G	G	D	K	E	L	P	Y	M	N	F	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	E	N	P	F	L	G	W	R	A	I	R	I	A	M	D	R
Query Conservation		.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Y	Q	R	S	D	F	E	G	I	F	R	A	M	D	G	L	P	V	T	I	R	L	L	D	P	P	L	H	E	F	L	P	E	G	N	I	E	D	I	V	S	E	L	C	A	E	T	G	A	N	Q	E	D	A	L	A	R	I	E	K	L	S	E	V	N	P	M	L	G	F	R	G	C	R	L	G	I	S	Y
Template Known Secondary structure															T	T	T	S									S		G	G	G	G	S			S																														S		G	G	G	S	S		T							S
Template Predicted Secondary structure
Template SS confidence
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.								.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.
Query Sequence		R	E	I	L	R	D	Q	L	R	A	I	L	R	A	S	A	F	G	K	.	.	.	.	.	.	.	L	R	I	M	F	P	M	I	I	S	V	E	E	V	R	A	L	R	K	E	I	E	I	Y	K	Q	E	L	R	D	E	G	K	A	F	D	E	S	I	E	I	G	V	M	V	E	T	P	A	A	A	T	I	A
Query Conservation																					.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.																																			.
Template Conservation																																																														.
Template Sequence		P	E	L	T	E	M	Q	A	R	A	I	F	E	A	A	I	A	M	T	N	Q	G	V	Q	V	F	P	E	I	M	V	P	L	V	G	T	P	Q	E	L	G	H	Q	V	T	L	I	R	Q	V	A	E	K	V	F	A	N	V	G	K	.	T	I	G	Y	K	V	G	T	M	I	E	I	P	R	A	A	L	V	A
Template Known Secondary structure																					T	T	T											S			S																							T		.												S						T
Template Predicted Secondary structure																																																														.
Template SS confidence
		680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.		740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.														.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.			.	.	.	.	500	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Query Sequence		R	H	L	A	K	E	V	D	F	F	S	I	G	T	N	D	L	T	Q	Y	T	L	A	V	D	R	G	N	D	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	S	H	L	Y	Q	P	M	S	P	S	V	L	N	L	I	K	Q	V	I	D	A	S	H	A	E	.	.	G	K	W	T	G	M	C	G	E
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation
Template Sequence		D	E	I	A	E	Q	A	E	F	F	S	F	G	T	N	D	L	T	Q	M	T	F	G	Y	S	R	D	D	V	G	K	F	I	P	V	Y	L	A	Q	G	I	L	Q	H	D	P	F	E	V	L	D	Q	R	G	V	G	E	L	V	K	F	A	T	E	R	G	R	K	A	R	P	N	L	K	V	G	I	C	G	E
Template Known Secondary structure					T	T	T		S															T			T	T	T	G	G	G	T							T	T	S		S	S		T	T	T	S			T	T	T																S	T	T							S	G
Template Predicted Secondary structure
Template SS confidence
		759	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	G	D	E	R	A	T	L	L	L	L	G	M	G	L	D	E	F	S	M	S	A	I	S	I	P	R	I	K	K	I	I	R	N	T	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	G	G	E	P	S	S	V	A	F	F	A	K	A	G	L	D	Y	V	S	C	S	P	F	R	V	P	I	A	R	L	A	A	A	Q	V	L
Template Known Secondary structure		G	G	G	S										T	T		S						G	G	G											T	T
Template Predicted Secondary structure
Template SS confidence
		839	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions