Job Description P08839 Confidence 70.92% Date Thu Jan 5 11:01:38 GMT 2012 Rank 83 Aligned Residues 92 % Identity 15% Template c3n2xB_ PDB info PDB header:lyase Chain: B: PDB Molecule:uncharacterized protein yage; PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate Resolution 2.20 Å

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		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.					.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																																				.	.	.	.
Query SS confidence																																																																				.	.	.	.
Query Sequence		D	Y	L	I	L	D	A	V	N	N	Q	V	Y	V	N	P	T	N	E	V	I	D	K	M	R	A	V	Q	E	Q	V	A	S	E	K	A	E	L	A	K	L	K	D	L	P	A	I	T	L	D	G	H	Q	V	E	V	C	A	N	I	G	T	V	R	D	V	.	.	.	.	E	G	A	E	R	N	G	A	E	G
Query Conservation																																																																				.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	G	L	F	F	L	G	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	R	R	V	P	V	L	I	G	T	G	G	T	N	A	R	E	T	I	E	L	S	Q	H	A	Q	Q	A	G	A	D	G
Template Known Secondary structure		S					S	S	T	T	T	T	G	G	G	S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S	S								S	S																T		S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.																		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	L	Y	R	T	E	F	L	F	M	D	R	D	A	L	P	T	E	E	E	Q	F	A	A	Y	K	A	V	A	E	A	C	G	S	Q	A	V	I	V
Query Conservation
Alig confidence			.	.	.	.	.	.																											.
Template Conservation			.	.	.	.	.	.																											.
Template Sequence		I	.	.	.	.	.	.	V	V	I	N	P	Y	Y	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	V	.	T	L	P	V	M	L
Template Known Secondary structure			.	.	.	.	.	.						S	S	S																	T		.	S	S
Template Predicted Secondary structure			.	.	.	.	.	.																											.
Template SS confidence
		112							.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions