Job Description P08839 Confidence 74.86% Date Thu Jan 5 11:01:38 GMT 2012 Rank 77 Aligned Residues 99 % Identity 22% Template c2zrvC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:isopentenyl-diphosphate delta-isomerase; PDBTitle: crystal structure of sulfolobus shibatae isopentenyl2 diphosphate isomerase in complex with reduced fmn. Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		150	.	.	.	.	.	.	.	.			.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.																		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure											.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	I	Q	D	E	V	I	L	.	.	V	A	A	D	L	T	P	S	E	T	A	Q	L	N	L	K	K	V	L	G	F	I	T	D	A	G	G	R	T	S	H	T	S	I	M	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	E	L	P	A	I	V	G	T	G	S	V	T	S
Query Conservation											.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation																																																																																	.
Template Sequence		K	E	L	S	V	P	I	I	V	K	E	S	G	N	G	I	S	M	E	T	A	K	L	L	Y	S	Y	G	I	K	N	F	D	T	S	G	Q	G	G	T	N	W	I	A	I	E	M	I	R	D	I	R	R	G	N	W	K	A	E	S	A	K	N	F	L	D	W	G	V	P	T	A	A	S	I	M	E	V	R	.
Template Known Secondary structure					S	S							S	S	S													T	T									B	T	S	B													T	T		T								T	T	T		S		B										.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	K	N	D	D	Y	L	I	L	D	A	V	N	N	Q	V	Y	V	N	P	T	N	E	V	I	D	K	M	R	A	V	Q	E	Q	V	A	S	E	K	A	E	L	A	K	L	K	D	L	P	A	I	T	L	D	G	H	Q	V	E	V	C	A	N	I	G	T	V	R	D	V	E	G	A	E	R	N	G	A	E
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	S	V	P	D	S	F	L	V	G	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	R	S	G	L	D	A	A	K	A	I	A	L	G	A	D
Template Known Secondary structure				S	T	T							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S			S											T		S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.																																																				.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		291	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	G	L	Y	R	T	E	F	L	F
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		I	A	G	M	A	L	P	.	V	L	K
Template Known Secondary structure									.
Template Predicted Secondary structure									.
Template SS confidence
		292	.	.	.	.	.	.		.	300	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions