Return to main results Retrieve Phyre Job Id

Job DescriptionP08839
Confidence37.56%DateThu Jan 5 11:01:38 GMT 2012
Rank144Aligned Residues77
% Identity12%Templatec2infB_
PDB info PDB header:lyaseChain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 bacillus subtilis
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   481........490.........500. ........510.........520.........530.........540.........550.
Predicted Secondary structure 


.












........
Query SS confidence 




















.

















































. . . . . . . .
Query Sequence  VLNLIKQVIDASHAEGKWTGM. CGELAGDERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQ. . . . . . . .
Query Conservation 

  
   
  
   
  
 
.


 
 

     

 


  


 
  
  

  
          

  ........
Alig confidence 




















.

...





















...........











........
Template Conservation    
  
 
   
   
  

    ...     
      
   
  
  ...........  
  

       
 



Template Sequence  IKPVMNRIFSELAKENVPLIMFGV. . . GASHLAGDWHDLPLDVVGLDWR. . . . . . . . . . . LGIDEARSKGITKTVQGNLD
Template Known Secondary structure  TTT
S

T...T
GGGTSS
S

TT...........S
TT

S

B
Template Predicted Secondary structure 






...








...........








Template SS confidence 















































































   223......230.........240...... ...250.........260........ .270.........280........
 
   552.......560.........570.
Predicted Secondary structure  .



Query SS confidence  .



















Query Sequence  . ALAQPTTDELMTLVNKFIEE
Query Conservation  . 
       
   
      
Alig confidence  .



















Template Conservation 
 

 

 


       
  
Template Sequence  PSILLAPWEVIEQKTKEILDQ
Template Known Secondary structure  GGGGGS
Template Predicted Secondary structure 


Template SS confidence 




















   289290.........300.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions