Job Description P08839 Confidence 100.00% Date Thu Jan 5 11:01:38 GMT 2012 Rank 3 Aligned Residues 515 % Identity 23% Template c1h6zA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyruvate phosphate dikinase; PDBTitle: 3.0 a resolution crystal structure of glycosomal pyruvate2 phosphate dikinase from trypanosoma brucei Resolution 3.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	L	A	S	P	G	I	A	F	G	K	A	L	L	L	K	E	D	E	I	V	I	D	R	K	K	I	S	A	D	Q	V	D	Q	E	V	E	R	F	L	S	G	R	A	K	A	S	A	Q	L	E	T	I	K	T	K	A	G	E	T	F	G	E	E	K	E	A	I	F	E	G	H	I	M	L	L	E	D	E
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	D	V	V	A	G	I	R	T	P	Q	Q	I	N	H	S	L	S	L	R	W	A	K	A	H	G	V	G	E	E	E	R	R	K	R	Y	P	S	M	E	E	A	M	P	E	N	Y	R	L	L	C	D	V	R	K	R	.	.	.	.	.	.	.	.	.	.	.	.	L	E	N	H	Y	R	D	M	Q	D	L
Template Known Secondary structure		T	T							S					S	S									T	T	S	S										S							S														.	.	.	.	.	.	.	.	.	.	.	.						T	S
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.													.	340	.	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.						.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	E	Q	E	I	I	A	L	I	.	.	.	.	.	K	D	K	H	M	T	A	D	A	A	A	H	E	V	I	E	G	Q	A	S	A	L	E	E	L	D	D	E	Y	L	K	E	R	A	A	D	V	R	D	I	G	K	R	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.					.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.
Template Sequence		E	F	T	V	Q	.	D	G	R	L	W	L	L	Q	C	R	N	G	K	R	T	I	H	A	A	V	R	I	A	I	D	M	V	N	E	G	L	I	S	R	E	E	A	V	L	R	I	D	P	Y	Q	V	D	H	L	M	H	P	N	L	E	P	G	A	E	K	A	N	K	P	I	G	R	G	L	A	A	S	P	G
Template Known Secondary structure							.	T	T																												T	S	S								T	S		G	G	G	G	G	G	G	G						T	T	T	T	S													S
Template Predicted Secondary structure							.
Template SS confidence
		350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
							139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure		.	.	.	.	.																																																																										.	.
Query SS confidence		.	.	.	.	.																																																																										.	.
Query Sequence		.	.	.	.	.	R	N	I	L	G	L	K	I	I	D	L	S	A	I	Q	D	E	V	I	L	V	A	A	D	L	T	P	S	E	T	A	Q	L	N	L	K	K	V	L	G	F	I	T	D	A	G	G	R	T	S	H	T	S	I	M	A	R	S	L	E	L	P	A	I	V	G	T	G	S	V	T	S	Q	.	.
Query Conservation		.	.	.	.	.																																																																										.	.
Alig confidence		.	.	.	.	.																																					.	.																																				.	.
Template Conservation																																											.	.
Template Sequence		A	A	V	G	Q	V	V	F	D	A	E	S	A	K	E	W	S	G	R	G	K	K	V	I	M	V	R	L	E	T	S	P	E	D	L	A	G	M	D	A	A	.	.	C	G	I	L	T	A	R	G	G	M	T	S	H	A	A	V	V	A	R	G	M	G	K	C	C	V	S	G	C	G	D	M	V	I	R	G	K
Template Known Secondary structure									S	S						S	T	T	T	T	S								S	S			G	G	G		T	T	T	T	T	S	.	.	S					S	S			T	T										T	T								T	T				S	S	S
Template Predicted Secondary structure																																											.	.
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.			470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
										212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	V	K	N	D	D	Y	L	I	L	D	A	V	N	N	Q	V	Y	V	N	P	T	N	E	V	I	D	K	M	R	A	V	Q	E	Q	V	A	S	E	K	A	E	L	A	K	L	K	D	L	P	A	I	T	L	D	G	H	Q	V	E	V	C	A	N	I	G	T	V	R	D	V	E	G
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	K	L	N	G	S	V	F	R	E	G	D	Y	I	T	I	D	G	S	K	G	L	I	Y	A	G	K	L	K	L	R	S	P	D	L	K	G	S	F	Q	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	W	C	Q	E	M	K	R	L	G	V	R	T	N	A	D	T	P	A	D	A	A	K
Template Known Secondary structure						T	T				S	S							T	T	S				S										S		S	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.										S							S	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.														550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.																					.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	R	N	G	A	E	G	V	G	L	Y	R	T	E	F	L	F	M	D	R	D	A	L	P	T	E	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	F	A	A	Y	K	A	V	A	E	A	C	G	S	Q	A	V	I	V	R	T	M	D	I	G	G	D	K	E	L	P
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	S	F	G	A	E	G	V	G	L	C	R	T	E	H	M	F	F	E	G	S	R	I	N	F	I	R	E	M	I	L	A	D	S	A	S	G	R	K	A	A	L	D	K	L	L	P	I	Q	R	A	D	F	V	G	I	L	R	A	M	R	G	L	P	V	T	I	R	L	L	D	P	P	L	H	E	F	V	P
Template Known Secondary structure				T	T	T			S					B		S	G	G	G	S	T	T	T										S		S	S																								T	T	T	S	S	S									S		G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.
		344	.	.	.																							.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.								.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Query Sequence		Y	M	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	E	E	N	P	F	L	G	W	R	A	I	R	I	A	M	D	R	R	E	I	L	R	D	Q	L	R	A	I	L	R	A	S	A	F	.	.	.	.	.	.	.	G	K	L	R	I	M	F	P	M	I	I
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	D	A	A	A	Q	F	E	L	A	Q	K	L	G	M	P	A	E	K	V	R	N	R	V	N	A	L	H	E	L	N	P	M	L	G	H	R	G	C	R	L	G	I	T	Y	P	E	I	Y	N	M	Q	V	R	A	I	I	E	A	A	I	A	V	S	E	E	G	S	S	V	I	P	E	I	M	V	P	L	V	G
Template Known Secondary structure		S	S		S	S	T	T	T	T	S		S	S	S												S	S			S	S	S	T	T	S	S									S	T	T																		T	T	T
Template Predicted Secondary structure
Template SS confidence
		654	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.		470	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		S	V	E	E	V	R	A	L	R	K	E	I	E	I	Y	K	Q	E	L	R	D	E	G	K	A	F	D	E	S	I	E	I	G	V	M	V	E	T	P	A	A	A	T	I	A	R	H	L	A	K	E	V	D	F	F	S	I	G	T	N	D	L	T	Q	Y	T	L	A	V	D	R	G	N	D	M	.	I	S	H	L
Query Conservation																																																																													.
Alig confidence																									.																																																				.
Template Conservation																									.
Template Sequence		K	K	E	E	L	S	L	I	R	E	E	V	V	K	T	A	E	A	V	I	T	K	S	.	G	K	R	V	H	Y	T	V	G	T	M	I	E	V	P	R	A	A	V	T	A	D	S	I	A	Q	K	A	D	F	F	S	F	G	T	N	D	L	T	Q	M	G	C	G	F	S	R	D	D	A	G	P	F	L	R	H
Template Known Secondary structure		S																						S	.		S												S						T					T	T	T		S						T	T								T			G	G	G						T	T
Template Predicted Secondary structure																									.
Template SS confidence
		734	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.		.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.
		474	.	.	.													.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.			.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query Sequence		Y	Q	P	M	.	.	.	.	.	.	.	.	.	.	.	.	S	P	S	V	L	N	L	I	K	Q	V	I	D	A	S	H	A	E	G	.	.	K	W	T	G	M	C	G	E	L	A	G	D	E	R	A	T	L	L	L	L	G	M	G	L	D	E	F	S	M	S	A	I	S	I	P	R	I	K	K	I	I	R	N
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		Y	G	N	L	G	I	Y	A	Q	D	P	F	Q	S	I	D	Q	E	G	I	G	E	L	V	R	I	A	V	T	K	G	R	R	V	K	P	M	L	K	M	G	I	C	G	E	H	G	G	D	P	A	T	I	G	F	C	H	K	V	G	L	D	Y	V	S	C	S	P	F	R	V	P	V	A	I	V	A	A	A	H
Template Known Secondary structure		T	T	T	T		S	S	S	S		T	T	T	S			T	T	T																S	T	T							S	G	G	G	G												T		S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		813	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.
		540	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	F	E	D	A	K	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	I	K	D	R	R	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		893	.	.	.	.	.	.	900