Job Description P0AAT9 Confidence 40.04% Date Thu Jan 5 11:13:48 GMT 2012 Rank 90 Aligned Residues 85 % Identity 18% Template c2xgvA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:psiv capsid n-terminal domain; PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik) Resolution 2.00 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	R	D	I	D	A	L	V	E	Q	A	R	E	R	V	I	K	T	G	E	L	T	R	T	E	V	D	E	L	T	R	A	V	R	R	D	L	E	E	F	A	M	S	Y	E	E	S	L	K	E	E	S	D	S	V	F	M	R	V	I	K	E	S	L	W	Q	E	L	A	D	I	T	D	K	T	Q	L	E	W
Query Conservation
Alig confidence																																																		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	R	T	V	A	A	W	I	R	Q	T	G	E	K	G	L	T	S	P	E	T	I	T	Y	W	G	L	I	S	Q	D	L	S	S	R	E	Q	V	Q	L	L	E	V	V	P	G	L	.	.	.	.	.	.	Q	A	D	K	D	M	L	G	A	Y	L	E	E	R	A	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T	T	T	S											T	T	T															S		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.							.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	V	F	Q	D	L	N	H	H	G	V	Y	H	S	G	E	V	V	G	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	W	D	A	Q	P	Q	Q	P	L	P	Y	T	S	A	H	I	R	G	L	T
Template Known Secondary structure						T	S	S		S	S		S	S						T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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