Job Description P0AAT9 Confidence 41.23% Date Thu Jan 5 11:13:48 GMT 2012 Rank 82 Aligned Residues 95 % Identity 17% Template c1tjlD_ PDB info PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli Resolution 2.00 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.								.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.																																					.	.
Query SS confidence																																	.	.	.	.	.	.	.																																					.	.
Query Sequence		L	T	R	T	E	V	D	E	L	T	R	A	V	R	R	D	L	E	E	F	A	M	S	Y	E	E	S	L	K	E	E	.	.	.	.	.	.	.	S	D	S	V	F	M	R	V	I	K	E	S	L	W	Q	E	L	A	D	I	T	D	K	T	Q	L	E	W	R	E	V	F	Q	D	L	N	.	.	H	H	G	V
Query Conservation																																	.	.	.	.	.	.	.																																					.	.
Alig confidence																																	.	.	.	.	.	.	.									.																												.	.
Template Conservation																																																.
Template Sequence		M	N	E	A	Q	L	A	H	F	R	R	I	L	E	A	W	R	N	Q	L	R	D	E	V	D	R	T	V	T	H	M	Q	D	E	A	A	N	F	P	D	P	V	D	R	A	A	.	Q	E	E	E	F	S	L	E	L	R	N	R	D	R	E	R	K	L	I	K	K	I	E	K	T	L	K	K	V	E	D	E	D
Template Known Secondary structure		T																																				S				G	G	G				.																															T	T
Template Predicted Secondary structure																																																.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	S	G	E	V	V	G	L	G	N	L	V	C	E	K	C	H	F	H	L	P	I	Y	T	P	E	V	L	T	L	C	P	K	C
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.
Template Sequence		F	G	.	.	.	.	.	.	.	.	.	.	Y	C	E	S	C	G	V	E	I	G	I	R	R	L	E	A	R	P	T	A	D	L	C
Template Known Secondary structure			S	.	.	.	.	.	.	.	.	.	.	B		S	S	S	S		B										T	T			S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.											.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions