Job Description P0AAT9 Confidence 52.97% Date Thu Jan 5 11:13:48 GMT 2012 Rank 59 Aligned Residues 58 % Identity 17% Template c1pqvS_ PDB info PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex Resolution 3.80 Å

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Show / Hide Conservation and Alignment quality

		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.											.	.	.	.	.	150	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.
Query Sequence		T	D	K	T	Q	L	E	W	R	E	V	F	Q	D	L	N	H	H	G	V	Y	H	S	G	E	V	V	G	L	G	N	L	V	C	E	K	C	H	F	H	L	P	I	Y	T	P	E	V	L	T	L	.	.	.	.	.	.	.	.	.	.	C	P	K	C	G	H	D
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	A	P	L	K	Q	K	I	E	E	I	A	K	Q	N	L	Y	N	A	Q	G	A	T	I	E	R	S	V	T	D	R	F	T	C	G	K	C	K	E	K	K	V	S	Y	Y	Q	L	Q	T	R	S	A	D	E	P	L	T	T	F	C	T	C	E	A	C	G	N	R
Template Known Secondary structure		S	T	T											T	T	T	T													T	T				S	S	S		S	S										S		S	S	S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions