Job Description P77434 Confidence 99.80% Date Thu Jan 5 12:29:17 GMT 2012 Rank 223 Aligned Residues 335 % Identity 16% Template d2a7va1 SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.04

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	R	L	P	P	Y	V	F	N	I	T	A	E	L	K	M	A	A	R	R	R	G	E	D	I	I	D	F	S	M	G	N	P	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D
Query Conservation
Alig confidence																								.	.	.	.									.	.																	.	.	.	.					.	.
Template Conservation																								.	.	.	.									.	.																	.	.	.	.					.	.
Template Sequence		L	S	D	S	D	P	E	M	W	E	L	L	Q	R	E	K	D	R	Q	C	R	G	.	.	.	.	L	E	L	I	A	S	E	N	.	.	F	C	S	R	A	A	L	E	A	L	G	S	C	L	N	N	.	.	.	.	K	Y	S	E	.	.	G	V	D	E	I	E	L	L	C	Q	R	R	A	L	E	A	F	D
Template Known Secondary structure																							S	.	.	.	.					T	T			.	.											T	S	G	G	G	T	.	.	.	.					.	.			T														T	T
Template Predicted Secondary structure																								.	.	.	.									.	.																	.	.	.	.					.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.					.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.					.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	T	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y	P	K	P
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	P	A	Q	W	G	V	N	V	Q	P	Y	S	G	S	P	A	N	L	A	V	Y	T	A	L	L	Q	P	H	D	R	I	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	L	N	P	K	T	G	L	I	D	Y	N	Q	L	A	L	T	A	R	L	F	R	P
Template Known Secondary structure				T	T	T								S	S															S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B		T	T	T		S	B
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.																						.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R
Query Conservation
Alig confidence																.	.	.	.	.																																									.	.	.	.	.											.	.
Template Conservation																.	.	.	.	.																																									.	.	.	.	.											.	.
Template Sequence		R	L	I	I	A	G	T	S	A	Y	A	R	L	I	.	.	.	.	.	D	Y	A	R	M	R	E	V	C	D	E	V	K	A	H	L	L	A	D	M	A	H	I	S	G	L	V	A	A	K	V	I	P	S	P	F	K	H	A	D	.	.	.	.	.	I	V	T	T	T	T	H	K	T	L	.	.	R	G	A	R
Template Known Secondary structure		S							S	S			S			.	.	.	.	.												T	T								G	G	G						T	T	S	S			G	G	G	T		S	.	.	.	.	.						S	S	G	G	G	.	.		S		S
Template Predicted Secondary structure																.	.	.	.	.																																									.	.	.	.	.											.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.						.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.						.	.	.	260	.	.	.	.	.	.			.	.	.	270
		253	.	.	.	.	.	.	260																.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.
Query Sequence		I	G	F	M	V	G	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	V	S	A	L	A	R	I	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	.	.	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template Conservation
Template Sequence		S	G	L	I	F	Y	R	K	G	V	K	A	V	D	P	K	T	G	R	E	I	P	Y	T	F	E	D	R	I	N	F	A	V	F	P	S	L	Q	G	G	P	H	N	H	A	I	A	A	V	A	V	A	L	K	Q	A	C	T	P	M	F	R	E	Y	S	L	Q	V	L	K	N	A	R	A	M	A	D	A	L	L
Template Known Secondary structure										S						T	T	T																	T	T	T	T			S																		S
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		316	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.				.	370	.	.	.	.	.	.							.	.	.	380	.	.	.	.	.
Predicted Secondary structure										.																																														.	.	.									.	.	.	.	.	.
Query SS confidence										.																																														.	.	.									.	.	.	.	.	.
Query Sequence		E	A	G	W	M	V	E	M	.	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	.	.	.	D	T	H	V	R	F	A	L	.	.	.	.	.	.	I	E	N	R	D	R	I	R	Q
Query Conservation										.																																														.	.	.									.	.	.	.	.	.
Alig confidence										.														.	.													.																		.	.	.									.	.	.	.	.	.
Template Conservation																								.	.													.
Template Sequence		E	R	G	Y	S	L	V	S	G	G	T	D	N	H	L	V	L	V	D	L	R	P	.	.	K	G	L	D	G	A	R	A	E	R	V	L	.	E	L	V	S	I	T	A	N	K	N	T	C	P	G	D	R	S	A	I	T	P	G	G	L	R	L	G	A	P	A	L	T	S	R	Q	F	R	E	D	D	F	R	R
Template Known Secondary structure			T	T				G	G	G	S		S	S	S							T	T	.	.	T	T											.			T	T									T	T				S	S	S		S						S						T	T
Template Predicted Secondary structure																								.	.													.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.			.	.	.	.	.	.	.	380	.	.	.	.		.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	R	G	I	K	A	M	F	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	D	F	I	D	E	G	V	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions