Job Description P77434 Confidence 99.97% Date Thu Jan 5 12:29:17 GMT 2012 Rank 122 Aligned Residues 339 % Identity 17% Template d1t3ia_ SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like Resolution 1.80

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		R	G	E	D	I	I	D	F	S	M	G	N	P	D	G	A	T	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	.	.	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L
Query Conservation																																				.	.
Alig confidence																.																				.	.																												.	.
Template Conservation																.																																																	.	.
Template Sequence		N	G	H	P	L	V	Y	L	D	N	A	A	T	S	.	Q	K	P	R	A	V	L	E	K	L	M	H	Y	Y	E	N	D	N	A	N	V	G	A	H	Q	L	S	V	R	A	T	D	A	Y	E	A	V	R	N	K	V	A	K	F	I	N	A	R	.	.	S	P	R	E	I	V	Y	T	R	N	A	T	E	A	I
Template Known Secondary structure		T	T							B	T	T	T			.																	T							S																					T	T		S	.	.		G	G	G					S	S
Template Predicted Secondary structure																.																																																	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		112	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.					.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure									.	.	.	.																									.	.	.	.
Query SS confidence									.	.	.	.																									.	.	.	.
Query Sequence		A	H	L	M	L	A	T	.	.	.	.	L	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	.	.	.	.	G	A	Q	V	R	S	V	P	L	V	E	G	V	D	F	F	N	E	L	E	R	A	I	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P	S	N	P
Query Conservation									.	.	.	.																									.	.	.	.
Alig confidence									.	.	.	.																									.	.	.	.													.	.
Template Conservation																																																					.	.
Template Sequence		N	L	V	A	Y	S	W	G	M	N	N	L	K	A	G	D	E	I	I	T	T	V	M	E	H	H	S	N	L	V	P	W	Q	M	V	A	A	K	T	G	A	V	L	K	F	V	Q	L	D	E	Q	.	.	E	S	F	D	L	E	H	F	K	T	L	L	S	E	K	T	K	L	V	T	V	V	H	I	S	N	T
Template Known Secondary structure								T							T	T							T	T			G	G	G	T																			B		T	T	.	.	S	S	B											T	T								S	B		T	T
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	K	T	L	V
Query Conservation
Alig confidence						.	.	.																																.	.	.	.	.	.	.	.																						.	.
Template Conservation						.	.	.																																.	.	.	.	.	.	.	.																						.	.
Template Sequence		L	G	C	V	.	.	.	N	P	A	E	E	I	A	Q	L	A	H	Q	A	G	A	K	V	L	V	D	A	C	Q	S	A	P	H	Y	P	L	D	.	.	.	.	.	.	.	.	V	Q	L	I	D	C	D	W	L	V	A	S	G	H	K	M	C	A	P	T	G	.	.	I	G	F	L	Y	G	K	E	E	I	L
Template Known Secondary structure		T		B	B	.	.	.													T	T								T	T	T	T	T	T	S				.	.	.	.	.	.	.	.					T		S						G	G	G	T	T	S		T	T	.	.
Template Predicted Secondary structure						.	.	.																																.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		182	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.									.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.
		264	.	.	.	.	.																						270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																											.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																											.
Query Sequence		S	A	L	A	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	.	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H	E	.	A	G	W	M
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																											.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																											.
Template Conservation
Template Sequence		E	A	M	P	P	F	F	G	G	G	E	M	I	A	E	V	F	F	D	H	F	T	T	G	E	L	P	H	K	F	E	A	G	T	P	A	I	A	E	A	I	A	L	G	A	A	V	D	Y	L	T	D	L	G	M	E	N	I	H	N	Y	E	V	E	L	T	H	Y	L	W	Q	G	L	G	Q	I	P	Q	L	R
Template Known Secondary structure				S				S		S	T	T	S						S	S							T	T	G	G	G			S	S																																									T		T	T
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		321	.	.	.	.	.						.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.							.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.																																										.	.	.	.	.	.											.	.
Query SS confidence								.	.	.	.	.																																										.	.	.	.	.	.											.	.
Query Sequence		V	E	M	P	K	A	.	.	.	.	.	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	.	.	.	.	.	.	G	D	T	H	V	R	F	A	L	I	.	.	E	N	R	D	R	I	R	Q	A	I
Query Conservation								.	.	.	.	.																																										.	.	.	.	.	.											.	.
Alig confidence								.	.	.	.	.									.	.	.	.													.																	.	.	.	.	.	.											.	.
Template Conservation																					.	.	.	.													.
Template Sequence		L	Y	G	P	N	P	K	H	G	D	R	A	A	L	A	S	F	N	V	.	.	.	.	A	G	L	H	A	S	D	V	A	T	M	V	.	D	Q	D	G	I	A	I	R	S	G	H	H	C	T	Q	P	L	H	R	L	F	D	A	S	G	S	A	R	A	S	L	Y	F	Y	N	T	K	E	E	I	D	L	F	L
Template Known Secondary structure				S			G	G	G	S		B		S							.	.	.	.	T	T	B										.		T	T	T				B		S		T	T								T	T											T	T
Template Predicted Secondary structure																					.	.	.	.													.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.					.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		388	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	I	K	A	M	F	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S	L	Q	A	T	I	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions