Job Description P77434 Confidence 99.93% Date Thu Jan 5 12:29:17 GMT 2012 Rank 176 Aligned Residues 341 % Identity 11% Template d1s0aa_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.71

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		33	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.							.
Query SS confidence														.	.							.
Query Sequence		R	R	G	E	D	I	I	D	F	S	M	G	.	.	N	P	D	G	A	T	.	P	P	H	I	V	E	K	L	C	T	V	A	Q	R	P	D	T	H	G	Y	S	T	S	R	G	I	P	R	L	R	R	A	I	S	R	W	Y	Q	D	R	Y	D	V	E	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E
Query Conservation														.	.							.
Alig confidence														.	.							.															.	.																														.	.	.
Template Conservation																																					.	.																														.	.	.
Template Sequence		S	D	G	R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	.	.	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	.	.	.	E	C	V	F	L	A	D	S	G	S	V
Template Known Secondary structure		T	T	S						S	S	T	T	T	T	T		T	T		B	S															.	.		S					S	S																	S		T	T		.	.	.							S	S
Template Predicted Secondary structure																																					.	.																														.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.	.	110	.	.	.	.
		110	.	.	.	.	.	.	.	.	.								120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.															.	.	.	.	.	150	.	.	.	.	.							.	.	.	.	160	.	.
Predicted Secondary structure												.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Query Sequence		G	L	A	H	L	M	L	A	T	L	.	.	.	.	.	.	.	D	H	G	D	T	V	L	V	P	N	P	S	Y	P	I	H	I	Y	G	A	V	I	A	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	R	S	V	P	L	V	E	G	V	.	.	.	.	.	.	D	F	F	N	E	L	E
Query Conservation												.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	G	E	W	D	E	R	D	M	V	G	F	A
Template Known Secondary structure																		T										T	T					S	S					T	T	S		T	T	T	T	T	G	G	G	G	T	T	T	S											S	B						G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		R	A	I	R	E	S	Y	P	K	P	K	M	M	I	L	G	F	P	S	N	P	T	A	.	.	Q	C	V	E	L	E	F	F	E	K	V	V	A	L	A	K	R	Y	D	V	L	V	V	H	D	L	A	Y	A	D	I	V	Y	D	G	W	K	A	P	S	I	M	Q	V	P	G	A	R	D	V	A	V	E	F	F
Query Conservation																									.	.
Alig confidence																									.	.																																											.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.
Template Sequence		R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	.	.	.	.	.	A	E	I	A	P	D	I	L
Template Known Secondary structure								T	T	T								S	S				T	T	T				B		T														T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	.	.	.	.	.	G	T				S
Template Predicted Secondary structure																																																																					.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.						.	.	.	.	.	.	.	270
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.
Query SS confidence																																.	.	.	.	.
Query Sequence		T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	K	T	L	V	S	A	L	A	R	I	K	.	.	.	.	.	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A	A	I	A	A	L	E	G	D	Q	Q	C	V	R	D	I	A	E	Q	Y	K	R	R	R	D	V	L	V	K	G	L	H
Query Conservation																																.	.	.	.	.
Alig confidence									.																							.	.	.	.	.																									.	.
Template Conservation									.																																																				.	.
Template Sequence		C	L	G	A	L	T	G	.	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	.	.	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A
Template Known Secondary structure						T	T	S	.	S	S	S																	T	S	T	T	S	S		S				T	T	T	T																	T	.	.																			G
Template Predicted Secondary structure									.																																																				.	.
Template SS confidence
		271	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.			.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		316	.				.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure				.	.	.																																																													.	.
Query SS confidence				.	.	.																																																													.	.
Query Sequence		E	A	.	.	.	G	W	M	V	E	M	P	K	A	S	M	Y	V	W	A	K	I	P	E	P	Y	A	A	M	G	S	L	E	F	A	K	K	L	L	N	E	A	K	V	C	V	S	P	G	I	G	F	G	D	Y	G	D	T	H	V	R	F	A	L	I	.	.	E	N	R	D	R	I	R	Q	A	I	R	G	I
Query Conservation				.	.	.																																																													.	.
Alig confidence				.	.	.																				.	.	.															.									.	.	.	.	.	.	.									.	.
Template Conservation																										.	.	.															.									.	.	.	.	.	.	.
Template Sequence		P	A	R	D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	.	.	.	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	.	G	V	W	I	R	P	F	G	.	.	.	.	.	.	.	K	L	I	Y	L	M	P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V
Template Known Secondary structure		G	G	G	G		T	T								T	T							S	S	.	.	.		B												T	.	T						B	T	.	.	.	.	.	.	.	T								T	T
Template Predicted Secondary structure																										.	.	.															.									.	.	.	.	.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.				.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.								.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		391	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	M	F	R	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	R	A	V	Q	D	E
Template Known Secondary structure					T	S	S	G
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions